goeckslab / isoseq-browser
☆13Updated 7 years ago
Alternatives and similar repositories for isoseq-browser:
Users that are interested in isoseq-browser are comparing it to the libraries listed below
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- ☆23Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- ☆19Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- BED QC tool (in the making)☆16Updated 2 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data☆9Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 3 weeks ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 3 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago