Alternatives and similar repositories for isoseq-browser:

Users that are interested in isoseq-browser are comparing it to the libraries listed below

• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 3 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 7 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 9 months ago
• nickloman / poredb
  ☆19Updated 8 years ago
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• maxplanck-ie / TheWhoTheWhatTheHuh
  "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.
  ☆11Updated 2 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• FredHutch / microbial-rnaseq
  Analysis of RNAseq data from (host-associated) microbial mixtures
  ☆12Updated 5 years ago
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 5 years ago
• rioualen / gene-regulation
  Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.
  ☆11Updated 7 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆33Updated 3 months ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 5 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last month
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆24Updated last month
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 6 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆28Updated 6 years ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated this week
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 3 years ago