fenghen360 / HomBlocksLinks
HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
☆35Updated 8 years ago
Alternatives and similar repositories for HomBlocks
Users that are interested in HomBlocks are comparing it to the libraries listed below
Sorting:
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆21Updated 6 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 4 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 7 months ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Updated last month
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- HyPhy standalone analyses☆47Updated 2 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- read and analyse RepeatMasker output☆26Updated 2 years ago
- iTAK☆44Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 5 months ago
- Scripts for NGS processing☆17Updated 8 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Updated last year
- MCMCtree tutorials☆24Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆33Updated 3 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- ☆33Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month