Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
☆235Jul 9, 2025Updated 9 months ago
Alternatives and similar repositories for IsoSeq
Users that are interested in IsoSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆179Apr 12, 2023Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆261Updated this week
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆126Mar 18, 2024Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆289Feb 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Technology agnostic long read analysis pipeline for transcriptomes☆158Jan 25, 2024Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68May 8, 2025Updated 11 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆22Jun 5, 2018Updated 7 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆165Feb 26, 2025Updated last year
- TransDecoder source☆304Mar 22, 2026Updated 3 weeks ago
- A minimap2 frontend for PacBio native data formats☆214Mar 4, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,154Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆269Mar 15, 2026Updated last month
- Coding Genome Reconstruction using Iso-Seq data☆60Oct 20, 2021Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Apr 9, 2026Updated last week
- ☆14Mar 13, 2018Updated 8 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆236Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆213Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆766Updated this week
- Transcript assembly and quantification for RNA-Seq☆502Dec 26, 2025Updated 3 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Full-Length Alternative Isoform analysis of RNA☆251Mar 30, 2026Updated 2 weeks ago
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- De-Novo Repeat Discovery Tool☆236Jul 21, 2025Updated 8 months ago
- source code for EVM☆124Nov 29, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆48Oct 22, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated 3 weeks ago
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated last month
- 3D de novo assembly (3D DNA) pipeline☆223Nov 29, 2023Updated 2 years ago
- Visualization and analysis software for Hi-C data -☆291Aug 6, 2024Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆569Updated this week
- Structural variation caller using third generation sequencing☆647Apr 2, 2026Updated 2 weeks ago