aubombarely / Organelle_PBA
A software to assemble chloroplast and mitochodrial genomes using PacBio data
☆37Updated 4 years ago
Related projects: ⓘ
- ☆41Updated 7 years ago
- A program to call variants from genome alignment☆75Updated 6 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- TGS scaffolding☆45Updated 2 years ago
- finshingTool☆53Updated 7 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆62Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆31Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆47Updated last year
- TSEBRA: Transcript Selector for BRAKER☆46Updated 3 months ago
- A tool for evaluate long-read de novo assembly results☆40Updated 3 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆48Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆41Updated 7 months ago
- paml documentation and tutorials☆43Updated last year
- A shiny application to visualize MCscan result☆31Updated last year
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- Synteny Imager☆60Updated 3 weeks ago
- Tools for improving the sensitivity and specificity of genome alignments☆56Updated 8 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆39Updated 8 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆23Updated 3 years ago
- Tutorial about R package PopGenome☆39Updated 5 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- Genome Annotation Pipeline☆28Updated 3 weeks ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆43Updated 2 months ago
- High-precision TE Annotator☆47Updated 2 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆65Updated 3 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago