aubombarely / Organelle_PBA
A software to assemble chloroplast and mitochodrial genomes using PacBio data
☆37Updated 4 years ago
Alternatives and similar repositories for Organelle_PBA:
Users that are interested in Organelle_PBA are comparing it to the libraries listed below
- ☆43Updated 8 years ago
- A program to call variants from genome alignment☆77Updated 10 months ago
- TGS scaffolding☆46Updated 3 years ago
- finshingTool☆55Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆74Updated 3 months ago
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- A tool for evaluate long-read de novo assembly results☆42Updated 5 months ago
- A organelle de novo genome assembly toolkit☆51Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 2 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated 11 months ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Synteny Imager☆60Updated 5 months ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 5 months ago
- Genome Annotation Without Nightmares☆43Updated last week
- Mapping pipeline for data generated using Arima-HiC☆71Updated 8 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆71Updated last month
- Predict 5mC in PacBio HiFi reads☆36Updated 2 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆56Updated 2 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 5 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- ☆76Updated 4 years ago
- ☆29Updated 3 weeks ago