Alternatives and similar repositories for Organelle_PBA

Users that are interested in Organelle_PBA are comparing it to the libraries listed below

• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 4 months ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆38Updated 6 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 9 months ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆69Updated 6 months ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• shilpagarg / DipAsm
  ☆77Updated 5 years ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆94Updated 2 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago
• liangclab / HERA
  ☆77Updated 5 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 3 weeks ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆13Updated 7 months ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆54Updated 5 months ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆71Updated 5 months ago
• kjenike / panagram
  ☆64Updated last month
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆49Updated last month
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆67Updated last month
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated last month
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆49Updated last year
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 7 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated last year