Long read to rMATS
☆32May 5, 2023Updated 2 years ago
Alternatives and similar repositories for lr2rmats
Users that are interested in lr2rmats are comparing it to the libraries listed below
Sorting:
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- ☆35Updated this week
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- PSI-Sigma☆40Nov 10, 2023Updated 2 years ago
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆13Nov 4, 2022Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Nov 28, 2025Updated 3 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 2 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Sep 26, 2023Updated 2 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆19Updated this week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆296Nov 6, 2025Updated 4 months ago
- ☆64Updated this week
- RNA-binding protein motif analysis☆10Sep 29, 2025Updated 5 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆233Jul 9, 2025Updated 8 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 10 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- ☆11Sep 17, 2020Updated 5 years ago
- IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell☆20Aug 27, 2021Updated 4 years ago
- ☆10May 31, 2022Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆34Mar 4, 2026Updated 2 weeks ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated last week
- ☆21Sep 22, 2022Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 2 months ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- Technology agnostic long read analysis pipeline for transcriptomes☆157Jan 25, 2024Updated 2 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- ☆159Updated this week
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆31Nov 6, 2025Updated 4 months ago