Xinglab / lr2rmatsLinks
Long read to rMATS
☆32Updated 2 years ago
Alternatives and similar repositories for lr2rmats
Users that are interested in lr2rmats are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- ☆32Updated 9 months ago
- ☆19Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ☆23Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- A software for calculating telomere length☆71Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 6 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- PSI-Sigma☆38Updated last year
- ☆37Updated 6 years ago
- fastx-utils using klib☆19Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆19Updated 2 years ago
- isoCirc☆10Updated last year
- ☆23Updated 8 months ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 3 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- ☆34Updated last year
- ☆13Updated 2 years ago