Xinglab / lr2rmatsLinks
Long read to rMATS
☆32Updated 2 years ago
Alternatives and similar repositories for lr2rmats
Users that are interested in lr2rmats are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- ☆23Updated 4 years ago
- ☆34Updated last month
- ☆20Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 2 weeks ago
- ☆37Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- isoCirc☆10Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆32Updated 2 years ago
- ☆13Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- microRNA PREdiction From small RNA-seq data☆30Updated 7 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- ☆24Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- fastx-utils using klib☆20Updated 5 years ago
- ☆38Updated last year
- Third-generation fusion gene detection☆13Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 7 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago