owenjm / damidseq_pipelineLinks
An automated pipeline for processing DamID sequencing datasets
☆16Updated 2 months ago
Alternatives and similar repositories for damidseq_pipeline
Users that are interested in damidseq_pipeline are comparing it to the libraries listed below
Sorting:
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆17Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆33Updated last month
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 weeks ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 8 months ago
- chia pet analysis software☆25Updated 6 years ago
- ☆33Updated 10 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆34Updated 6 years ago
- A toolkit for analyzing architectural stripes☆20Updated 10 months ago
- ☆23Updated 8 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year