An automated pipeline for processing DamID sequencing datasets
☆16Aug 28, 2025Updated last year
Alternatives and similar repositories for damidseq_pipeline
Users that are interested in damidseq_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 13, 2018Updated 8 years ago
- ☆11Aug 21, 2024Updated 2 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 4 years ago
- ☆22Aug 11, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆23Jan 6, 2026Updated 8 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Jul 30, 2026Updated last month
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆34Jun 26, 2026Updated 2 months ago
- ☆11Aug 3, 2018Updated 8 years ago
- ☆26Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Dec 21, 2022Updated 3 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Feb 9, 2019Updated 7 years ago
- DEAPP shiny App☆30Jun 8, 2022Updated 4 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 9 years ago
- Methods for estimating intrinsic dimension and methods for generating data on manifolds☆12May 23, 2019Updated 7 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆41Oct 13, 2021Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆38Aug 28, 2015Updated 11 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- ☆10Jul 8, 2020Updated 6 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 6 months ago
- Testing module for Galaxy workflows☆10Jul 31, 2018Updated 8 years ago
- ☆14Mar 22, 2018Updated 8 years ago
- Neural Networks in Erlang☆15Dec 20, 2020Updated 5 years ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆19Aug 24, 2026Updated 2 weeks ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆34Feb 22, 2018Updated 8 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆215Jan 9, 2023Updated 3 years ago
- Python module to analyse CRISPR-based libraries☆16Apr 1, 2021Updated 5 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- Seven Bridges Genomics aligner/caller debugging and analysis tools☆14Nov 20, 2018Updated 7 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆112Nov 12, 2025Updated 9 months ago