IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
☆22Jun 5, 2018Updated 7 years ago
Alternatives and similar repositories for IsoSeq3
Users that are interested in IsoSeq3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 13, 2018Updated 8 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆235Jul 9, 2025Updated 9 months ago
- ☆11Dec 15, 2025Updated 4 months ago
- ☆11Sep 17, 2020Updated 5 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆179Apr 12, 2023Updated 3 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 8 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 4 years ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- TransDecoder source☆304Mar 22, 2026Updated 3 weeks ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Jan 22, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- pbsv - PacBio structural variant (SV) calling and analysis tools☆165Feb 26, 2025Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆68May 8, 2025Updated 11 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 11 months ago
- ☆18Jun 30, 2023Updated 2 years ago
- CGM 主站☆11Mar 10, 2025Updated last year
- ☆37Apr 13, 2024Updated 2 years ago
- Coding-Potential Assessment Tool using an alignment-free logistic regression model☆16Feb 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Genome alignment and synteny plots☆34Mar 24, 2026Updated 3 weeks ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 6 years ago
- ☆37Feb 22, 2023Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆289Feb 4, 2025Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last month
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- Structural Variants Pipeline for Long Reads☆44Jul 17, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- ☆13Sep 1, 2020Updated 5 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 7 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆30Sep 11, 2021Updated 4 years ago