IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
☆23Jun 5, 2018Updated 8 years ago
Alternatives and similar repositories for IsoSeq3
Users that are interested in IsoSeq3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 13, 2018Updated 8 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆243Jun 24, 2026Updated 3 months ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated 3 weeks ago
- ☆11Sep 17, 2020Updated 6 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 9 years ago
- The analysis pipeline for FLEP-seq☆18Aug 18, 2023Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆189Apr 12, 2023Updated 3 years ago
- CGM 主站☆11Jun 8, 2026Updated 4 months ago
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 5 years ago
- TransDecoder source☆309Mar 22, 2026Updated 6 months ago
- ☆18Jun 30, 2023Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 10 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Jun 8, 2026Updated 4 months ago
- BRAKER re-implemented with snakemake☆89Oct 10, 2026Updated last week
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- ☆38Apr 13, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SUPPA: Fast quantification of splicing and differential splicing☆307Nov 6, 2025Updated 11 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆299Feb 4, 2025Updated last year
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 7 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- A pipeline for isoseq☆23Jun 8, 2018Updated 8 years ago
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated last week
- ☆37Feb 22, 2023Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 6 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 3 years ago
- A Nextflow DSL2 pipeline for pretext generation in curation☆14Oct 8, 2026Updated last week
- ☆13Sep 1, 2020Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago