ma-compbio / CTCF-MP
☆11Updated 4 years ago
Alternatives and similar repositories for CTCF-MP:
Users that are interested in CTCF-MP are comparing it to the libraries listed below
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 2 weeks ago
- BPNet manuscript code.☆11Updated 4 years ago
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- ☆18Updated 2 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆13Updated 5 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆14Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 7 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Updated 11 months ago
- ☆14Updated 4 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ☆34Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆10Updated 5 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago