satijalab / scChromHMMLinks
🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
☆28Updated 3 years ago
Alternatives and similar repositories for scChromHMM
Users that are interested in scChromHMM are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆41Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ☆28Updated 6 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- ☆49Updated 10 months ago
- ☆29Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- scover☆23Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆34Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 8 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- ☆18Updated last year