satijalab / scChromHMM
𧬠π¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
β27Updated 3 years ago
Alternatives and similar repositories for scChromHMM:
Users that are interested in scChromHMM are comparing it to the libraries listed below
- Bead-based single-cell atac processingβ31Updated 3 years ago
- scoverβ23Updated last year
- Differential ATAC-seq toolkitβ27Updated last year
- processes GoT amplicon data and generates a table of metricsβ28Updated 2 years ago
- β45Updated 7 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantificationβ21Updated 3 months ago
- R/Bioconductor package for working with 10x scATACseq dataβ39Updated last year
- kallisto index tag extractorβ20Updated 5 years ago
- β28Updated 6 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.β36Updated this week
- Evaluation of the effect of quantification choices on RNA velocity estimatesβ27Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencingβ28Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seqβ16Updated 3 years ago
- binned motif enrichment analysis and visualisationβ40Updated this week
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)β21Updated 2 years ago
- R package with motifs for use with chromVARβ25Updated 7 years ago
- R package for reading in & working with NucleoATAC outputsβ26Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq dataβ50Updated last year
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seqβ14Updated this week
- Pipeline for Universal Mapping of ATAC-seqβ25Updated 10 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlasβ25Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.β22Updated 5 years ago
- β29Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separβ¦β29Updated 2 years ago
- scSNV Mapping tool for 10X Single Cell Dataβ24Updated 11 months ago
- Isoform co-usage networks from single-cell RNA-seq dataβ15Updated last year
- Scripts to install as a Bioconda package for making workflowsβ18Updated 6 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic dataβ43Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-sβ¦β20Updated 4 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysisβ32Updated 3 years ago