satijalab / scChromHMM
š§¬ š¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
ā26Updated 3 years ago
Alternatives and similar repositories for scChromHMM:
Users that are interested in scChromHMM are comparing it to the libraries listed below
- Bead-based single-cell atac processingā31Updated 3 years ago
- Differential ATAC-seq toolkitā27Updated last year
- scoverā22Updated last year
- ā44Updated 5 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimatesā27Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cellā24Updated 7 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.ā36Updated 3 months ago
- kallisto index tag extractorā20Updated 5 years ago
- processes GoT amplicon data and generates a table of metricsā27Updated 2 years ago
- ā29Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencingā28Updated 4 years ago
- ā28Updated 5 years ago
- R/Bioconductor package for working with 10x scATACseq dataā38Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-sā¦ā20Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantificationā18Updated 2 months ago
- Pipeline for Universal Mapping of ATAC-seqā24Updated 9 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seqā15Updated 3 years ago
- R package for reading in & working with NucleoATAC outputsā26Updated 6 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.ā21Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiationā21Updated 7 months ago
- ā15Updated 8 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqā31Updated 4 years ago
- ā25Updated last month
- Supplementary data for Petti, et al 2019 scRNA mutation publicationā16Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq datasetā28Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlasā25Updated last year
- Inferring gene co-expression networks from single cell gene expression dataā24Updated 2 years ago
- Scripts to install as a Bioconda package for making workflowsā18Updated 4 months ago
- ā20Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.ā28Updated 5 months ago