ma-compbio / scGHOST
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
☆18Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for scGHOST
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆19Updated 2 months ago
- ☆40Updated 3 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- ☆12Updated last year
- ☆20Updated last year
- ☆15Updated 11 months ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆35Updated last year
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆10Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆34Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆29Updated 2 years ago
- ☆18Updated last year
- ☆27Updated 3 months ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 6 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated last week
- A collection of perl scripts for NGS analysis☆12Updated last month
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated last month
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated last year
- ☆30Updated 6 months ago
- ☆22Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆12Updated last year
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- ☆20Updated 4 years ago