ma-compbio / scGHOSTLinks
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
☆21Updated last year
Alternatives and similar repositories for scGHOST
Users that are interested in scGHOST are comparing it to the libraries listed below
Sorting:
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆19Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆14Updated 9 months ago
- ☆69Updated last month
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- ☆13Updated 4 years ago
- ☆12Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆53Updated last year
- ☆33Updated 11 months ago
- ☆36Updated 3 years ago
- A collection of perl scripts for NGS analysis☆17Updated last year
- ☆20Updated 2 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆39Updated 4 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated last month
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆26Updated 9 months ago
- cell type specific, trait-associated gene regulation☆29Updated 9 months ago
- ☆15Updated 10 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 9 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated this week