ma-compbio / scGHOSTLinks
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
☆20Updated last year
Alternatives and similar repositories for scGHOST
Users that are interested in scGHOST are comparing it to the libraries listed below
Sorting:
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- ☆20Updated last year
- ☆11Updated 4 years ago
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆13Updated 3 months ago
- ☆17Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- ☆26Updated 3 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- ☆67Updated 2 months ago
- ☆49Updated last year
- A collection of perl scripts for NGS analysis☆16Updated 10 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆37Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- ☆36Updated last month
- ☆20Updated 4 years ago
- ☆30Updated 2 years ago
- ☆32Updated 6 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- ☆12Updated 2 years ago