single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
☆21Apr 8, 2024Updated last year
Alternatives and similar repositories for scGHOST
Users that are interested in scGHOST are comparing it to the libraries listed below
Sorting:
- Scripts + resources for analyzing combinatorial Hi-C data☆32Nov 5, 2019Updated 6 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Oct 29, 2025Updated 4 months ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- ☆71Nov 21, 2025Updated 3 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- ☆13Jul 21, 2021Updated 4 years ago
- ☆13Jul 26, 2022Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated 3 weeks ago
- ☆32Sep 28, 2019Updated 6 years ago
- Web-Application for the cross-visualization of HiC and ChIP-seq data.☆18Feb 17, 2026Updated 2 weeks ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Oct 6, 2025Updated 4 months ago
- Single-cell Hi-C data analysis toolbox☆27Aug 13, 2021Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Nov 14, 2024Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 5 months ago
- ☆22Jul 27, 2023Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Aug 29, 2022Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- a computational tool for analyzing single cell Hi-C data☆25Apr 23, 2024Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 7 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Oct 23, 2024Updated last year
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- ☆16Aug 14, 2024Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆23Feb 9, 2026Updated 3 weeks ago
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆29Jul 5, 2024Updated last year
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 8 months ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆24Jan 20, 2026Updated last month
- Scripts for HiRES analysis☆14Jul 26, 2024Updated last year
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Apr 1, 2025Updated 11 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week