All-in-one analysis pipeline
☆40Sep 3, 2024Updated last year
Alternatives and similar repositories for Taiji
Users that are interested in Taiji are comparing it to the libraries listed below
Sorting:
- Haskell numerical ODE solvers☆14Aug 21, 2017Updated 8 years ago
- Show, plot and compare benchmark results☆16Oct 28, 2025Updated 4 months ago
- Haskell library of data types and calculations for positions on planet Earth☆20Feb 2, 2026Updated last month
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Radiocarbon calibration command line tool and Haskell module☆11Nov 24, 2025Updated 3 months ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆38Aug 2, 2021Updated 4 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated 3 weeks ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- A categorical framework for circuit construction☆31Sep 27, 2016Updated 9 years ago
- ☆12Mar 15, 2025Updated 11 months ago
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆12Mar 21, 2023Updated 2 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆10Nov 11, 2025Updated 3 months ago
- scRNAseq clustering tool☆11Apr 14, 2020Updated 5 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- Pure Haskell implementation of SplitMix pseudo-random number generator☆26Jan 4, 2026Updated 2 months ago
- ☆63Jul 13, 2023Updated 2 years ago
- Sparse matrix linear equation solver, using the Conjugate Gradient algorithm☆16Sep 5, 2020Updated 5 years ago
- sliding fast fourier transform using haskell streaming☆13Feb 19, 2019Updated 7 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 4 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆10Aug 12, 2020Updated 5 years ago
- ☆12Feb 16, 2026Updated 3 weeks ago
- An AI for Tetris on Jstris☆11Dec 25, 2019Updated 6 years ago
- Split integers into digits, blazingly fast☆14Dec 28, 2025Updated 2 months ago
- Code repository for TCAT analyses☆13Sep 26, 2025Updated 5 months ago
- Haskell implementation of HyperLogLog++ & MinHash for efficient cardinality and intersection estimation☆12Aug 1, 2016Updated 9 years ago
- Typeclass for array types☆19Apr 7, 2025Updated 11 months ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- ☆13Nov 29, 2022Updated 3 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Dec 12, 2024Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Generic implementation of the Has pattern for MonadReader/MonadState and CoHas for MonadError☆15Jul 19, 2025Updated 7 months ago