tanlongzhi / dip-cLinks
Tools to analyze Dip-C (or other 3C/Hi-C) data
☆73Updated last year
Alternatives and similar repositories for dip-c
Users that are interested in dip-c are comparing it to the libraries listed below
Sorting:
- Genome-wide contact analysis using sklearn☆72Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated 2 months ago
- Analysis of Paired-Tag datasets☆43Updated last year
- Links to ATAC-seq analysis tools☆76Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 6 months ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆87Updated 2 weeks ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- ☆25Updated 4 years ago
- Tutorial Website☆62Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- SNV calling from single cell sequencing☆118Updated last year
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆30Updated this week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Updated 5 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆86Updated last year
- Basic workflow for ATAC-seq analysis☆92Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- ☆33Updated last year
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆79Updated 11 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago