tanlongzhi / dip-c
Tools to analyze Dip-C (or other 3C/Hi-C) data
☆63Updated 3 months ago
Alternatives and similar repositories for dip-c:
Users that are interested in dip-c are comparing it to the libraries listed below
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Tutorial Website☆56Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- release version☆51Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆24Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- Analysis of Paired-Tag datasets☆39Updated last year
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 10 months ago
- Micro-C QC and data analysis☆15Updated last year
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A self-contained repository of all code needed for SPRITE analysis☆20Updated 3 years ago
- ☆31Updated 8 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆81Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆73Updated 11 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆62Updated this week
- Allele-specific alignment sorting☆54Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- HiC uniform processing pipeline☆58Updated last year
- Genome-wide contact analysis using sklearn☆60Updated 10 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆44Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆44Updated 6 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆66Updated last year