Alternatives and similar repositories for scHiCluster

Users that are interested in scHiCluster are comparing it to the libraries listed below

• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆45Updated last month
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 6 months ago
• HYsxe / PRINT
  ☆37Updated last year
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆92Updated 2 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 11 months ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆19Updated 4 years ago
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆42Updated 2 years ago
• yal054 / epiformer
  ☆26Updated 8 months ago
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆45Updated 3 months ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated 2 years ago
• JinLabBioinfo / DeepLoop
  DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data
  ☆34Updated 9 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆126Updated last month
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆28Updated 2 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 3 months ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 6 years ago
• liulab-dfci / lisa2
  ☆32Updated 3 years ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 6 months ago
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆85Updated 2 weeks ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 2 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 9 months ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• wycwycpku / RSCORE
  ☆27Updated 4 years ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆21Updated last year
• mdozmorov / scHiC_notes
  Notes on single-cell Hi-C technologies, tools, and data
  ☆86Updated last year
• liu-bioinfo-lab / scHiCTools
  a computational tool for analyzing single cell Hi-C data
  ☆26Updated last year
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆42Updated 5 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆39Updated 2 years ago
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆20Updated 2 years ago