Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
☆42Mar 3, 2017Updated 8 years ago
Alternatives and similar repositories for StemID
Users that are interested in StemID are comparing it to the libraries listed below
Sorting:
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Nov 25, 2024Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆47May 13, 2016Updated 9 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- ☆19Mar 6, 2019Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 9 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Mar 2, 2020Updated 6 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Dec 10, 2019Updated 6 years ago
- Differential expression analysis for single-cell RNA-seq data☆14Feb 15, 2019Updated 7 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- simpler single cell RNAseq data clustering☆43Feb 28, 2025Updated last year
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- inference of transcription factor activity at the single cell level☆24Dec 16, 2025Updated 2 months ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- ☆69May 2, 2018Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Single-CELL rna-seq analysis software☆39Oct 25, 2017Updated 8 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Oct 28, 2022Updated 3 years ago
- Batch effects and the effective design of single-cell gene expression studies☆105Jul 23, 2019Updated 6 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- RNA velocity estimation in R☆194Sep 14, 2023Updated 2 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆651Nov 14, 2025Updated 3 months ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 7 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Linear trajectory inference for single-cell RNA-seq☆61Nov 26, 2025Updated 3 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆438Feb 20, 2026Updated last week