dgrun / StemID
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
☆42Updated 7 years ago
Alternatives and similar repositories for StemID:
Users that are interested in StemID are comparing it to the libraries listed below
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Clone of the Bioconductor repository for the scran package.☆40Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- ☆53Updated 4 years ago
- ☆38Updated 4 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- ☆16Updated 5 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated last month
- Mouse cell atlas☆60Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- ☆25Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- simpler single cell RNAseq data clustering☆40Updated 7 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆27Updated 4 years ago
- Explore and share your scRNAseq clustering results☆47Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Clone identification from single-cell data☆60Updated 2 years ago