Read level DNA methylation analysis of bisulfite converted sequencing data
☆19Feb 23, 2026Updated 4 months ago
Alternatives and similar repositories for RLM
Users that are interested in RLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆52Aug 25, 2025Updated 10 months ago
- ☆56Mar 9, 2022Updated 4 years ago
- ☆10Jul 13, 2022Updated 3 years ago
- ☆13Aug 6, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- BISulfite-seq CUI Toolkit☆26Jun 24, 2026Updated last week
- ☆52Jan 4, 2023Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- ☆20Sep 5, 2023Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆193Apr 19, 2026Updated 2 months ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 7 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20May 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- deduplicate FASTA and FASTQ files☆23Feb 16, 2022Updated 4 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- ☆25Jan 18, 2022Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 10 months ago
- ☆42Apr 15, 2021Updated 5 years ago
- Kraken2 Server☆23Nov 24, 2025Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆28Mar 15, 2017Updated 9 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- ☆38Feb 27, 2020Updated 6 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- Detecting contamination in NGS data and multi-species analysis☆87Nov 7, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- ☆94Aug 29, 2025Updated 10 months ago
- A library for counting small kmer frequencies in nucleotide sequences.☆27Oct 29, 2024Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆25Mar 22, 2022Updated 4 years ago