sarahet / RLMLinks
Read level DNA methylation analysis of bisulfite converted sequencing data
☆18Updated 6 months ago
Alternatives and similar repositories for RLM
Users that are interested in RLM are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Long read to rMATS☆32Updated 2 years ago
- Find and characterise transposable element insertions☆20Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- BISulfite-seq CUI Toolkit☆25Updated 3 weeks ago
- ☆39Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Updated and optimized fork of BSMAP☆23Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Reconstruction of focal amplifications with long reads☆23Updated 2 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- ☆49Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 3 weeks ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- Somatic point mutation caller☆32Updated 8 months ago
- ☆22Updated 5 years ago
- processing 10x genomics reads☆26Updated 6 years ago
- ☆13Updated 3 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆43Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆24Updated last year
- ☆37Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- ☆13Updated 8 years ago