sarahet / RLMLinks
Read level DNA methylation analysis of bisulfite converted sequencing data
☆18Updated 5 months ago
Alternatives and similar repositories for RLM
Users that are interested in RLM are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- ☆38Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- Find and characterise transposable element insertions☆20Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆24Updated 11 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆37Updated 6 years ago
- ☆38Updated 2 years ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆22Updated 5 years ago
- Improving gene isoform quantification with miniQuant☆29Updated 2 months ago
- ☆20Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- Micro DNA identification☆24Updated 4 years ago
- Reconstruction of focal amplifications with long reads☆23Updated last month
- BISulfite-seq CUI Toolkit☆25Updated 3 weeks ago
- ☆37Updated last year
- 4C-seq processing pipeline☆26Updated 8 months ago