AllonKleinLab / paper-dataLinks
☆20Updated 2 weeks ago
Alternatives and similar repositories for paper-data
Users that are interested in paper-data are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- ☆59Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆18Updated 2 years ago
- Functional Inference of Gene Regulation☆48Updated last year
- ☆26Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- ☆38Updated 4 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆45Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 4 months ago
- Single cell omics biology annotations☆51Updated 6 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- ☆26Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Python implementation of Gene Trajectory☆28Updated last year
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆32Updated 9 months ago
- ☆30Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- ☆58Updated 2 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- R implementation of GeneTrajectory☆65Updated last year
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago