GreenleafLab / Brain_ASDLinks
☆10Updated 4 years ago
Alternatives and similar repositories for Brain_ASD
Users that are interested in Brain_ASD are comparing it to the libraries listed below
Sorting:
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆32Updated 8 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- single-cell Nucleosome Methylation Transcription☆14Updated 7 years ago
- ☆37Updated 7 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆14Updated 5 months ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆13Updated last year
- scVI extension for unspliced RNA☆16Updated 5 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated last week
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- ☆17Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 11 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Pipeline to run scE2G☆28Updated 2 weeks ago
- A method for analyzing scATAC-seq experiments.☆34Updated 3 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- ☆26Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month