GreenleafLab / Brain_ASD
☆10Updated 3 years ago
Alternatives and similar repositories for Brain_ASD:
Users that are interested in Brain_ASD are comparing it to the libraries listed below
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 2 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 years ago
- ☆16Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆18Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆26Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Code, data and analysis for moslin.☆12Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆13Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆12Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 6 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆26Updated last month
- ☆35Updated last year
- ☆45Updated 7 months ago
- ☆15Updated 2 years ago
- ☆12Updated 5 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆11Updated 11 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago