☆12Oct 4, 2021Updated 4 years ago
Alternatives and similar repositories for Brain_ASD
Users that are interested in Brain_ASD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- ☆15Mar 15, 2023Updated 3 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆13Jan 23, 2025Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 3 weeks ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆40Aug 2, 2021Updated 5 years ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated last month
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated last year
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- scEntropy method and scEGMM framework☆18Oct 26, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆25Aug 11, 2025Updated 11 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- A Biking simulator that can be controlled with a real bike connected to an arduino☆11May 31, 2020Updated 6 years ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 9 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- AES-optimized cpuminer☆12Sep 25, 2016Updated 9 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Aug 2, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19Oct 21, 2024Updated last year
- Supplementary files and notebooks to recreate figures.☆23Updated this week
- ☆19Jan 18, 2023Updated 3 years ago
- Diffusion model for gene regulatory network inference.☆30Jul 19, 2026Updated 3 weeks ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- ☆26Oct 23, 2024Updated last year
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Jul 18, 2026Updated 3 weeks ago
- ☆27Apr 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Updated this week
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆30Oct 10, 2025Updated 10 months ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 8 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆76Updated this week