Alternatives and similar repositories for MIMOSCA

Users that are interested in MIMOSCA are comparing it to the libraries listed below

• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆89Updated 2 weeks ago
• timoast / sinto
  Tools for single-cell data processing
  ☆125Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆149Updated last year
• KrishnaswamyLab / SingleCellWorkshop
  ☆90Updated 4 years ago
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆140Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 2 months ago
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆114Updated 8 months ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 9 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 5 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆89Updated last year
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆106Updated 2 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆103Updated last year
• scverse / scanpy_usage
  Scanpy use cases.
  ☆85Updated 4 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 6 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆87Updated 8 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆110Updated 2 months ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆109Updated 7 months ago
• rajewsky-lab / novosparc
  ☆130Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆178Updated last year
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 5 months ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆90Updated 2 years ago
• cellgeni / batchbench
  ☆47Updated 3 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆137Updated last year
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 4 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆150Updated last month
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆117Updated this week