asncd / MIMOSCALinks
A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
☆98Updated 6 years ago
Alternatives and similar repositories for MIMOSCA
Users that are interested in MIMOSCA are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆155Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- ☆96Updated 5 years ago
- Tools for single-cell data processing☆132Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- SingleCellNet: classify single cells across species and platforms☆140Updated 2 years ago
- ☆85Updated 5 years ago
- Geometry-preserving random sampling☆95Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Clonotype Neighbor Graph Analysis☆95Updated 5 months ago
- ☆57Updated 7 years ago
- ☆70Updated 2 years ago
- ☆131Updated 2 years ago
- Network Reverse Engineering through AP inference of Mutual Information☆86Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆71Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆115Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Metacell - Single-cell mRNA Analysis☆120Updated last year
- ☆46Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Updated this week
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- ☆63Updated 5 years ago
- Scanpy use cases.☆90Updated 5 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated 2 weeks ago