asncd / MIMOSCALinks
A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
☆97Updated 6 years ago
Alternatives and similar repositories for MIMOSCA
Users that are interested in MIMOSCA are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆154Updated last year
- ☆96Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Tools for single-cell data processing☆128Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆142Updated last year
- Clonotype Neighbor Graph Analysis☆92Updated 3 months ago
- ☆67Updated 2 years ago
- ☆131Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- software to detect doublets☆95Updated 11 months ago
- ☆57Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Scanpy use cases.☆87Updated 5 years ago
- ☆85Updated 5 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Updated last month
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- ☆71Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Geometry-preserving random sampling☆95Updated last year
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆31Updated 2 years ago
- ☆46Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆217Updated last year
- ☆62Updated 5 years ago