ydLiu-HIT / SKSVView external linksLinks
ultrafast structural variation detection from circular consensus sequencing reads
☆13Mar 8, 2022Updated 3 years ago
Alternatives and similar repositories for SKSV
Users that are interested in SKSV are comparing it to the libraries listed below
Sorting:
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 9 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- A VCF comparison engine for structual variant benchmarking☆23Sep 26, 2025Updated 4 months ago
- This is an updated mirror of the original PacBio Read Simulator☆39Mar 30, 2018Updated 7 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 6 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Long read based human genomic structural variation detection with cuteSV☆278Sep 30, 2025Updated 4 months ago
- ☆20Sep 14, 2022Updated 3 years ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Jan 20, 2026Updated 3 weeks ago
- ☆19Nov 22, 2022Updated 3 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 6 years ago
- Structural Variant Identification Method using Genome Assemblies☆134Sep 16, 2022Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆94Jan 14, 2026Updated last month
- Bidirectional WFA (Paper)☆48May 20, 2024Updated last year
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆25Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 4 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated 10 months ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- ☆22Updated this week
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 4 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year