ydLiu-HIT / SKSV
ultrafast structural variation detection from circular consensus sequencing reads
☆13Updated 2 years ago
Alternatives and similar repositories for SKSV:
Users that are interested in SKSV are comparing it to the libraries listed below
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- SV calling for diploid assemblies☆26Updated 11 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆34Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- ☆30Updated 5 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆32Updated this week
- ☆17Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆35Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆34Updated 10 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- Variant annotation and merging pipeline☆31Updated last month
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 8 years ago
- ☆48Updated 8 months ago