Alternatives and similar repositories for SKSV

Users that are interested in SKSV are comparing it to the libraries listed below

• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 6 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• mcfrith / tandem-genotypes
  ☆48Updated 11 months ago
• Nextomics / nextsv
  ☆34Updated last year
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 7 months ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 3 weeks ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 6 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated 10 months ago
• maickrau / ribotin
  ☆35Updated 2 weeks ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated 8 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last week
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆15Updated 11 months ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• ablab / VerityMap
  ☆35Updated 2 years ago
• hitbc / gcSV
  ☆21Updated 3 months ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆35Updated this week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated this week