ultrafast structural variation detection from circular consensus sequencing reads
☆13Mar 8, 2022Updated 4 years ago
Alternatives and similar repositories for SKSV
Users that are interested in SKSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 8 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 5 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A VCF comparison engine for structual variant benchmarking☆24Sep 26, 2025Updated last year
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆16May 4, 2016Updated 10 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆10Dec 21, 2022Updated 3 years ago
- This is an updated mirror of the original PacBio Read Simulator☆40Mar 30, 2018Updated 8 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Aug 1, 2021Updated 5 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- ☆11Mar 4, 2025Updated last year
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆148Sep 16, 2022Updated 4 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals☆14Oct 27, 2025Updated last year
- ☆24Jul 15, 2026Updated 3 months ago
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆88Oct 28, 2026Updated last week
- An experimental tool to estimate the similarity between all pairs of contigs☆41Apr 12, 2021Updated 5 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆113Jun 25, 2026Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last month
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago