lh3 / fermi2
☆26Updated 3 years ago
Alternatives and similar repositories for fermi2:
Users that are interested in fermi2 are comparing it to the libraries listed below
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆16Updated 7 years ago
- Integrated Variant Caller☆17Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 7 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- ☆34Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Tools for bam file processing☆55Updated 9 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- a string to graph aligner☆41Updated 8 years ago
- ☆21Updated last year
- ☆21Updated this week