kwongj / contig-pullerLinks
Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence
☆13Updated 7 years ago
Alternatives and similar repositories for contig-puller
Users that are interested in contig-puller are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- ☆20Updated 9 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Prophage Activity Estimator☆26Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Extract metadata from biosamples in NCBI☆15Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- IslandPath standalone software☆32Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆27Updated last week
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- ☆25Updated 6 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago