kwongj / contig-pullerLinks
Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence
☆13Updated 7 years ago
Alternatives and similar repositories for contig-puller
Users that are interested in contig-puller are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆20Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- ☆20Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- ☆54Updated 4 months ago
- ☆24Updated 6 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 8 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 6 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- IslandPath standalone software☆33Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Order and orientation of complete bacterial genomes☆29Updated 4 months ago
- Analysing the genomic context of mobile genes☆11Updated 4 months ago
- Plasmid exploration of bacterial genomes☆21Updated 3 years ago
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- ☆26Updated 2 years ago
- Clermont PCR method In-Silico☆24Updated last year
- ☆14Updated 2 years ago