lh3 / ropebwt2Links
Incremental construction of FM-index for DNA sequences
☆71Updated last year
Alternatives and similar repositories for ropebwt2
Users that are interested in ropebwt2 are comparing it to the libraries listed below
Sorting:
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- BWT-based index for graphs☆72Updated 5 months ago
- Substring index for paths in a graph☆61Updated 4 months ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 7 months ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- a string to graph aligner☆41Updated 9 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 8 months ago
- An Oxford Nanopore Basecaller☆71Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆63Updated 7 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- collection of data structures and algorithms☆19Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 3 months ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 6 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago