lh3 / fermiLinks
A WGS de novo assembler based on the FMD-index for large genomes
☆75Updated 12 years ago
Alternatives and similar repositories for fermi
Users that are interested in fermi are comparing it to the libraries listed below
Sorting:
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- scripts to parse IrysView output☆39Updated 10 years ago
- Browser based application for viewing bam alignments☆56Updated 9 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- SURPI☆86Updated 9 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- Find all significant local alignments between reads☆141Updated last year
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated last year
- Fast and memory-efficient sequencing error corrector☆94Updated 3 weeks ago
- UCSC Nanopore☆44Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 11 years ago