lh3 / fermi
A WGS de novo assembler based on the FMD-index for large genomes
☆74Updated 11 years ago
Alternatives and similar repositories for fermi:
Users that are interested in fermi are comparing it to the libraries listed below
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- scripts to parse IrysView output☆39Updated 9 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- UCSC Nanopore☆43Updated 5 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆47Updated 3 years ago
- Structural Variant Index☆72Updated 4 months ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- ☆49Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- SRAToolkit has been REPLACED - see README☆38Updated 8 years ago