lh3 / fermiLinks
A WGS de novo assembler based on the FMD-index for large genomes
☆74Updated 11 years ago
Alternatives and similar repositories for fermi
Users that are interested in fermi are comparing it to the libraries listed below
Sorting:
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆109Updated 4 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 11 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆31Updated 7 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Windowed Adaptive Trimming for fastq files using quality☆25Updated 10 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Tools for bam file processing☆55Updated 10 years ago
- ☆95Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago