Alternatives and similar repositories for fermi

Users that are interested in fermi are comparing it to the libraries listed below

• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆63Updated 7 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆67Updated 10 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆113Updated 6 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆95Updated 5 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• COMBINE-lab / RapMap
  Rapid sensitive and accurate read mapping via quasi-mapping
  ☆89Updated 5 years ago
• jgurtowski / ectools
  tools for error correction and working with long read data
  ☆44Updated 10 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 2 years ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆86Updated 7 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• jgurtowski / nanocorr
  Error correction for Oxford Nanopore data
  ☆47Updated 4 years ago
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆79Updated last year
• mateidavid / nanocall
  An Oxford Nanopore Basecaller
  ☆71Updated 3 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆57Updated 8 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 6 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• lh3 / hapdip
  The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
  ☆31Updated 7 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 6 years ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 8 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆87Updated 10 months ago
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated 8 months ago
• RCollins13 / CNView
  Visualization and annotation of CNVs from population-scale whole-genome sequencing data
  ☆72Updated 7 years ago