Fragmentase Artifact Detection and Elimination
☆13Mar 22, 2022Updated 4 years ago
Alternatives and similar repositories for fade
Users that are interested in fade are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jun 14, 2023Updated 3 years ago
- Sample Contamination Estimate from VCF☆21Oct 23, 2026Updated last week
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 3 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- ☆57Jan 11, 2023Updated 3 years ago
- Software for FLT3-ITD detection and MRD monitoring assay☆16Jul 28, 2026Updated 3 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- ☆12Oct 19, 2021Updated 5 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 3 months ago
- ☆36Mar 16, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- ☆57Mar 31, 2020Updated 6 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆10Jun 5, 2023Updated 3 years ago
- LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.☆15Aug 2, 2026Updated 2 months ago
- a flexible tool for microsatellite investigation and visualization☆10Jun 15, 2026Updated 4 months ago
- The nimble & robust variant annotator☆196Apr 20, 2026Updated 6 months ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆21Oct 17, 2025Updated last year
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 7 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 2 months ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆73May 26, 2025Updated last year
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 8 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Alignment-free detection of structural variations and viral integrations in circulating tumor DNA☆17Nov 11, 2021Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…☆23Jan 17, 2025Updated last year
- ☆11Apr 6, 2021Updated 5 years ago