terrimporter / MetaWorks
MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.
☆18Updated last year
Alternatives and similar repositories for MetaWorks:
Users that are interested in MetaWorks are comparing it to the libraries listed below
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- ☆20Updated last year
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆13Updated 2 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- workflows for offline analysis of 16S rRNA Nanopore data☆12Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆18Updated this week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- starfish: a modular toolkit for giant mobile element annotation☆28Updated last month
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Speedy versions of phyloseq functions☆46Updated 8 months ago
- ☆47Updated 9 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆59Updated 2 years ago
- ☆51Updated this week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- R package for microbial pangenomics☆21Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- GenePiper☆12Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Plot microbiome time series in parallel☆24Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 3 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- ☆29Updated 10 months ago
- ☆13Updated 7 years ago