MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic assignments.
☆22Feb 23, 2026Updated 2 months ago
Alternatives and similar repositories for MetaWorks
Users that are interested in MetaWorks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 2 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆18May 26, 2025Updated 11 months ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Distance denoise by Entropy☆15Oct 17, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 3 months ago
- Interface to the Bold Systems barcode webservice☆21Jan 6, 2025Updated last year
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Web site for Shiny Developer Series☆10Oct 4, 2025Updated 6 months ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 4 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 9 months ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆33Mar 21, 2026Updated last month
- ☆23Feb 23, 2023Updated 3 years ago
- creating reference databases for amplicon sequencing☆49Jan 13, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Aug 23, 2023Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- finding conserved regions in highly diverse genomes☆16Apr 24, 2026Updated last week
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- ☆15Apr 1, 2024Updated 2 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 6 months ago
- 🍶 Genome assembly with short sequence reads☆25Mar 10, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 2 months ago
- ☆25May 21, 2021Updated 4 years ago
- ☆14Oct 17, 2024Updated last year
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated last month
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 9 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 5 months ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- Toolkit to convert the output of common variant calling programs to VCF☆23Dec 7, 2022Updated 3 years ago
- iSDM is an open-source R package that implements a few functions useful for modeling the spatial distribution of invasive species☆17Jan 12, 2023Updated 3 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Apr 15, 2026Updated 2 weeks ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 2 months ago
- http://tinyurl.com/cruk-shiny☆10Sep 13, 2017Updated 8 years ago