DIncalciLab / samuraiLinks
A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).
☆14Updated last week
Alternatives and similar repositories for samurai
Users that are interested in samurai are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- ☆15Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- ☆24Updated last year
- Flexible Bayesian inference of mutational signatures☆38Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 3 weeks ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated last week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- Tools for merging Tandem Repeat VCF files☆37Updated 9 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- CADD-SV – a framework to score the effect of structural variants☆18Updated last week
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- ☆24Updated 8 months ago
- ☆44Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆17Updated last month
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago