lh3 / bfcLinks
High-performance error correction for Illumina resequencing data
☆72Updated 9 years ago
Alternatives and similar repositories for bfc
Users that are interested in bfc are comparing it to the libraries listed below
Sorting:
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- UCSC Nanopore☆43Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Structural Variant Index☆74Updated 6 months ago
- ☆78Updated 11 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 7 months ago