lh3 / bfc
High-performance error correction for Illumina resequencing data
☆70Updated 8 years ago
Alternatives and similar repositories for bfc:
Users that are interested in bfc are comparing it to the libraries listed below
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- ☆78Updated 11 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- An awk-like VCF parser☆56Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 10 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆94Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago