ssadedin / ximmerLinks
Ximmer is a system for CNV calling on exome and targeted genomic sequencing
☆19Updated 3 weeks ago
Alternatives and similar repositories for ximmer
Users that are interested in ximmer are comparing it to the libraries listed below
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆13Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆11Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ☆21Updated last week
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- sort genomic data☆36Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- ☆23Updated 3 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago