ssadedin / ximmer
Ximmer is a system for CNV calling on exome and targeted genomic sequencing
☆19Updated 2 months ago
Alternatives and similar repositories for ximmer:
Users that are interested in ximmer are comparing it to the libraries listed below
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- ☆11Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆23Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆21Updated last week
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- ☆21Updated 3 weeks ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago