common-workflow-lab / gxargparseLinks
Automated CWL and Galaxy XML generation for Python tools that use argparse and click
☆11Updated 6 years ago
Alternatives and similar repositories for gxargparse
Users that are interested in gxargparse are comparing it to the libraries listed below
Sorting:
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 10 years ago
- ☆11Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last month
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Variant Effect Prediction for Python☆15Updated 8 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Python bindings for WDL☆10Updated 7 years ago
- GenoTypes Compressor☆16Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 8 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆12Updated 8 years ago