mourisl / LighterLinks
Fast and memory-efficient sequencing error corrector
☆93Updated last year
Alternatives and similar repositories for Lighter
Users that are interested in Lighter are comparing it to the libraries listed below
Sorting:
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- An Oxford Nanopore Basecaller☆71Updated 3 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- De novo genome assembly and multisample variant calling☆113Updated 6 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- Genome inference from a population reference graph☆97Updated 4 months ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 10 years ago
- ☆49Updated 2 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆97Updated 3 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆96Updated 9 months ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- a string to graph aligner☆41Updated 9 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago