Fast and memory-efficient sequencing error corrector
☆94Jan 4, 2026Updated last month
Alternatives and similar repositories for Lighter
Users that are interested in Lighter are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Oct 1, 2013Updated 12 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- ✏️ Genome assembly polishing & SNV detection☆72Oct 3, 2025Updated 4 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Oct 18, 2019Updated 6 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Nov 6, 2024Updated last year
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Fast in-silico normalization algorithm for NGS data☆23Nov 1, 2021Updated 4 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago