hammerlab / pageant
Parallel Genomic Analysis Toolkit
☆14Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for pageant
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆15Updated 8 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆39Updated last week
- WebApp for DNA variants interpretation☆13Updated 3 weeks ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Load genomic BAM files using Apache Spark☆20Updated 6 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆39Updated 3 weeks ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 5 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Scalable RNA-seq analysis☆73Updated 3 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- A fast, parallel, streaming multipart uploader for S3☆13Updated 7 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 7 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 8 years ago
- Fast and memory-efficient sequencing error corrector☆92Updated 6 months ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- New url: https://github.com/biointec/halvade☆19Updated 7 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 2 years ago
- Genetics training camp☆21Updated 4 years ago