broadinstitute / gamgeeLinks
A C++14 library for NGS data formats
☆39Updated 6 years ago
Alternatives and similar repositories for gamgee
Users that are interested in gamgee are comparing it to the libraries listed below
Sorting:
- reference-guided aligner for next-generation sequencing technologies☆57Updated 9 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Useful set of classes for creating statistical genetic programs.☆52Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Substring index for paths in a graph☆60Updated 6 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Structural variant detection and association testing☆109Updated 2 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- ☆36Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆111Updated 7 months ago
- Tools for bam file processing☆55Updated 10 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83Updated 3 years ago
- Find all significant local alignments between reads☆141Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- ☆55Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated last month
- NGS Language Bindings☆119Updated last year
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago