broadinstitute / gamgee
A C++14 library for NGS data formats
☆40Updated 5 years ago
Alternatives and similar repositories for gamgee:
Users that are interested in gamgee are comparing it to the libraries listed below
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆21Updated 7 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 4 years ago
- ☆37Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- reference-guided aligner for next-generation sequencing technologies☆54Updated 8 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Fast fusion detection using kallisto☆80Updated 6 months ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Useful set of classes for creating statistical genetic programs.☆52Updated last year
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- Deprecated. See new version: https://github.com/statgen/bravo_api - BRowse All Variants Online☆9Updated 2 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆33Updated 4 months ago
- Tools for bam file processing☆55Updated 10 years ago
- Lightweight resources assembly algorithm☆19Updated 7 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆51Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- scripts to parse IrysView output☆39Updated 9 years ago
- ☆30Updated 8 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Structural variant detection and association testing☆107Updated 2 years ago