Alternatives and similar repositories for gamgee

Users that are interested in gamgee are comparing it to the libraries listed below

• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆56Updated 9 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆32Updated 2 years ago
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆83Updated 3 years ago
• GregoryFaust / yaha
  yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…
  ☆20Updated 7 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 5 months ago
• statgen / libStatGen
  Useful set of classes for creating statistical genetic programs.
  ☆52Updated 2 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆67Updated 11 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆99Updated 2 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 7 months ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• PacificBiosciences / pbbam
  PacBio BAM C++ library
  ☆21Updated 2 years ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 5 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆63Updated 4 years ago
• zeeev / wham
  Structural variant detection and association testing
  ☆109Updated 2 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 3 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 4 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆140Updated last year
• statgen / EPACTS
  ☆35Updated 3 years ago
• sequencing / EAGLE
  Enhanced Artificial Genome Engine: next generation sequencing reads simulator
  ☆33Updated 5 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 8 years ago
• Illumina / gvcfgenotyper
  A utility for merging and genotyping Illumina-style GVCFs.
  ☆33Updated 6 years ago