Population Reference Graphs for the HLA and MHC.
☆35Dec 18, 2018Updated 7 years ago
Alternatives and similar repositories for MHC-PRG
Users that are interested in MHC-PRG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆42May 21, 2019Updated 7 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- BWT-based index for graphs☆73Mar 12, 2025Updated last year
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- Population-scale detection of novel sequence insertions