AlexanderDilthey / MHC-PRGLinks
Population Reference Graphs for the HLA and MHC.
☆35Updated 7 years ago
Alternatives and similar repositories for MHC-PRG
Users that are interested in MHC-PRG are comparing it to the libraries listed below
Sorting:
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 10 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- sort genomic data☆36Updated 3 months ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- a string to graph aligner☆41Updated 9 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆36Updated 5 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago