Cibiv / NextGenMap
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias…
☆86Updated 5 years ago
Alternatives and similar repositories for NextGenMap:
Users that are interested in NextGenMap are comparing it to the libraries listed below
- ☆78Updated 10 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆106Updated 2 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆102Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- ☆89Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- ABRA2☆92Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- Haplotype based scans for selection☆116Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- VCF-kit: Assorted utilities for the variant call format☆126Updated 5 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Genome inference from a population reference graph☆94Updated 2 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆91Updated last year
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆102Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Estimate recombination rates from population genetic data☆62Updated 4 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- UCSC Nanopore☆43Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year