Cibiv / NextGenMap
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias…
☆87Updated 5 years ago
Alternatives and similar repositories for NextGenMap:
Users that are interested in NextGenMap are comparing it to the libraries listed below
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆107Updated 2 years ago
- ☆120Updated 6 months ago
- VCF-kit: Assorted utilities for the variant call format☆129Updated last week
- Read visualizer for structural variants☆83Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆51Updated 5 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 6 months ago
- Bayesian genotyper for structural variants☆131Updated 4 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- ABRA2☆92Updated 2 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆93Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- ☆78Updated 11 years ago