Cibiv / NextGenMapLinks
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids bias…
☆87Updated 6 years ago
Alternatives and similar repositories for NextGenMap
Users that are interested in NextGenMap are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆52Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- ☆95Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆86Updated 7 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated this week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 10 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- De novo genome assembly and multisample variant calling☆113Updated 6 years ago
- ☆78Updated 11 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Structural Variant Index☆75Updated 8 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago