Piecewise alignment for layers of mosaics
☆59Jun 10, 2026Updated this week
Alternatives and similar repositories for palom
Users that are interested in palom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Oct 23, 2025Updated 7 months ago
- ☆32Jun 24, 2025Updated 11 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆33Apr 9, 2026Updated 2 months ago
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 2 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 10 months ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆112Mar 11, 2026Updated 3 months ago
- ☆25Jun 6, 2023Updated 3 years ago
- ☆22May 25, 2026Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆175May 14, 2026Updated 3 weeks ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 3 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆104Mar 12, 2026Updated 3 months ago
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆102Jul 4, 2024Updated last year
- ☆72Sep 23, 2024Updated last year
- ☆20Apr 8, 2025Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 6 months ago
- ☆23Mar 26, 2021Updated 5 years ago
- Create web-based OME-Zarr galleries☆25May 26, 2026Updated 2 weeks ago
- HCC_Deep_learning☆18Jun 8, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated 2 weeks ago
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- Accurate and efficient spot detection for microscopy data☆130Feb 5, 2026Updated 4 months ago
- Multiple-choice microscopy pipeline☆153May 21, 2026Updated 3 weeks ago
- ☆23Apr 1, 2026Updated 2 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- CODEX data processing code☆12Jul 1, 2025Updated 11 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Apr 21, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- version 1 scripts for CODA☆63May 7, 2024Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Aligning images acquired with the IBEX microscopy imaging technique☆20Apr 12, 2026Updated 2 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆66Mar 14, 2024Updated 2 years ago
- Tool to create images and configuration files for Minerva-Story☆16Jun 1, 2026Updated last week
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 10 months ago