labsyspharm / palomLinks
Piecewise alignment for layers of mosaics
☆35Updated 5 months ago
Alternatives and similar repositories for palom
Users that are interested in palom are comparing it to the libraries listed below
Sorting:
- ☆37Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆100Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- ☆30Updated 3 weeks ago
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- ☆24Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 9 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- The official QuPath extension for InstanSeg☆29Updated 3 weeks ago
- Evaluating the quality of a cell segmentation method without reference.☆13Updated 6 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- ☆32Updated 6 months ago
- ☆209Updated last week
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- version 1 scripts for CODA☆60Updated last year
- CODEX data processing code☆12Updated 7 months ago
- QuPath extension to interactively align images☆26Updated 6 months ago
- Multiple-choice microscopy pipeline☆145Updated 2 weeks ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated this week
- Bio-Formats image file format to raw format converter☆103Updated last month
- ☆27Updated 7 months ago
- ☆92Updated 3 months ago
- ☆27Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆102Updated last month
- Cloud-based data annotation tools for biological images☆84Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆59Updated 2 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆64Updated last year
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Updated 7 months ago