labsyspharm / palom

Related projects: ⓘ

• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆43Updated last month
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆22Updated 4 months ago
• KerenLab / CellSighter
  ☆28Updated 9 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  ☆15Updated this week
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆14Updated 2 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆19Updated last month
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated last year
• labsyspharm / minerva_analysis
  ☆24Updated this week
• angelolab / Nimbus
  ☆12Updated last month
• MarkZaidi / QuASI
  List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
  ☆24Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆76Updated 2 months ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆33Updated last week
• joonkeekim / mediar-napari
  ☆19Updated 5 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆20Updated 3 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆36Updated this week
• djimenezsanchez / NaroNet
  Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…
  ☆15Updated 8 months ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆12Updated last year
• AllenCell / aics-ml-segmentation
  ☆29Updated 2 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆46Updated 2 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆102Updated 2 weeks ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated last year
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆51Updated last week
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆14Updated 2 years ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆60Updated last week
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆43Updated 6 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆72Updated 3 weeks ago
• michaellee1 / CellSeg
  ☆20Updated last year
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated last month
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated 3 months ago