labsyspharm / palomLinks
Piecewise alignment for layers of mosaics
☆25Updated last month
Alternatives and similar repositories for palom
Users that are interested in palom are comparing it to the libraries listed below
Sorting:
- QuPath extension for Cellsparse☆18Updated last month
- ☆33Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- The official QuPath extension for InstanSeg☆19Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- Raw format to OME-TIFF converter☆53Updated 3 weeks ago
- CODEX data processing code☆12Updated this week
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- ☆26Updated last month
- A pipeline to transform images into valuable analysis items☆13Updated this week
- ☆26Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- ☆23Updated 2 years ago
- ☆32Updated 2 years ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆72Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- Segment Anything for Histopathology☆33Updated last week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆81Updated 3 months ago
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago
- comseg☆21Updated 4 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last month
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- ☆18Updated last year
- Development of PICASSO plugin for napari☆17Updated 2 years ago