labsyspharm / palomLinks
Piecewise alignment for layers of mosaics
☆28Updated 3 weeks ago
Alternatives and similar repositories for palom
Users that are interested in palom are comparing it to the libraries listed below
Sorting:
- QuPath extension for Cellsparse☆19Updated 2 months ago
- ☆33Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆90Updated last year
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- The official QuPath extension for InstanSeg☆24Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- Transfer trained StarDist models across imaging modalities☆3Updated 10 months ago
- QuPath extension to interactively align images☆24Updated last month
- CODEX data processing code☆12Updated last month
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- ☆26Updated 2 months ago
- Bio-Formats image file format to raw format converter☆94Updated this week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆74Updated 2 weeks ago
- ☆32Updated this week
- Multiple-choice microscopy pipeline☆135Updated last week
- ☆26Updated 3 weeks ago
- ☆23Updated 2 years ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last week
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 3 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆29Updated last month
- A pipeline to transform images into valuable analysis items☆13Updated last month
- 3D segmentation for cells and organoids of 3D multichannel images☆18Updated last month
- Image registration (alignment) software for large microscopy images☆25Updated last year
- QuPath extension for Segment Anything Model (SAM)☆114Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Segment Anything for Histopathology☆37Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year