Basic example of using OME-Zarr in a Nextflow pipeline
☆21Jul 15, 2025Updated last year
Alternatives and similar repositories for ome-zarr-image-analysis-nextflow
Users that are interested in ome-zarr-image-analysis-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Sep 15, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- A napari plugin for zarr backed OME-NGFF images☆54Aug 31, 2026Updated 3 weeks ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Block-wise operations for large nD volumes☆45Updated this week
- Browse, share, and publish OME-Zarr data☆30Updated this week
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- ☆16Updated this week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Sep 2, 2026Updated 2 weeks ago
- ☆22Aug 31, 2026Updated 3 weeks ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆25Feb 14, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Raw format to OME-TIFF converter☆58Sep 3, 2026Updated 2 weeks ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 4 months ago
- ☆27Sep 11, 2026Updated last week
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Aug 31, 2026Updated 3 weeks ago
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 2 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆171Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GPU-accelerated Image Processing library for Python☆65Updated this week
- Gamified image segmentation quality estimation☆20May 1, 2025Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated last month
- ☆19Aug 27, 2026Updated 3 weeks ago
- ☆45Sep 16, 2026Updated last week
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 11 months ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- ☆17Aug 3, 2026Updated last month
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bio-Formats image file format to raw format converter☆111Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 4 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 5 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Sep 1, 2026Updated 3 weeks ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 2 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated 2 months ago