BioImageTools / ome-zarr-image-analysis-nextflowLinks
Basic example of using OME-Zarr in a Nextflow pipeline
☆17Updated 3 months ago
Alternatives and similar repositories for ome-zarr-image-analysis-nextflow
Users that are interested in ome-zarr-image-analysis-nextflow are comparing it to the libraries listed below
Sorting:
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- A minimal Python package for reading and validating OME-Zarr (meta)data☆35Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- ☆39Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆25Updated last week
- A napari plugin for zarr backed OME-NGFF images☆38Updated last week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆21Updated last week
- native Python dataclasses for the OME data model☆61Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Pydantic models for OME-NGFF☆24Updated last month
- Create web-based OME-Zarr galleries☆21Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated this week
- Browse your OMERO database from within napari.☆39Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆53Updated 3 weeks ago
- ☆18Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Command-line client for Fractal☆47Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆22Updated last month
- ☆14Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated 3 weeks ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- ☆25Updated 2 years ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated 2 months ago
- Main tasks for the Fractal analytics platform☆21Updated last week
- A stable diffusion demo for napari☆11Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week