Basic example of using OME-Zarr in a Nextflow pipeline
☆21Jul 15, 2025Updated last year
Alternatives and similar repositories for ome-zarr-image-analysis-nextflow
Users that are interested in ome-zarr-image-analysis-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Oct 26, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 3 months ago
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week
- Tiled processing of arbitrarily large images — any image, any function.☆19Updated this week
- A napari plugin for zarr backed OME-NGFF images☆56Oct 19, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- Browse, share, and publish OME-Zarr data☆30Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- ☆15Updated this week
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An OMERO.web app for sharing data and prepare data for web download.☆12Sep 18, 2026Updated last month
- Conversion between spatial transformations of various formats / parametrizations☆10May 15, 2026Updated 5 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆40Oct 10, 2026Updated 3 weeks ago
- Use dimensionality reduction to create thumnails for high-dimensional imaging☆12May 21, 2026Updated 5 months ago
- ☆45Oct 20, 2026Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Oct 26, 2026Updated last week
- ☆22Oct 19, 2026Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated 2 months ago
- Raw format to OME-TIFF converter☆59Oct 1, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A BioIO reader plugin for reading Zarr files in the OME format.☆14Sep 8, 2026Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆178Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 months ago
- NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurat…☆13Updated this week
- Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.☆11Updated this week
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆29Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆263Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- ☆27Sep 11, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆24Nov 24, 2025Updated 11 months ago
- Gamified image segmentation quality estimation☆20May 1, 2025Updated last year
- Automated batch processing of cell and tissue microscopy image data in Napari☆24Oct 21, 2026Updated last week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Oct 25, 2026Updated last week
- S3 Proxy Service☆13Oct 25, 2026Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 6 months ago
- ☆10May 9, 2022Updated 4 years ago