schienstockd / ceceliaLinks
Framework for image and flow cytometry analysis
☆30Updated 2 weeks ago
Alternatives and similar repositories for cecelia
Users that are interested in cecelia are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- Interactive visualization of spatial omics data☆70Updated last week
- Python API and Jupyter widget for Vitessce☆56Updated this week
- ☆18Updated 5 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- ☆73Updated last week
- Static plotting for spatialdata☆68Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated this week
- ☆34Updated last year
- A plugin to visualise 3D spatial single cell omics☆21Updated 4 months ago
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- ☆29Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 6 months ago
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- ☆27Updated last year
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- ☆60Updated last week
- Minimum Information about Tissue Imaging☆20Updated 2 years ago
- ☆18Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated 9 months ago
- Efficient data structures and IO for whole slide image analysis☆16Updated last week
- A toolkit for processing multiplexed tissue images☆65Updated last week
- ☆28Updated 2 weeks ago
- Deep learning based spot detection for FISH images.☆25Updated last month