schienstockd / cecelia
Framework for image and flow cytometry analysis
☆25Updated 2 weeks ago
Alternatives and similar repositories for cecelia:
Users that are interested in cecelia are comparing it to the libraries listed below
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- ☆17Updated 2 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- Interactive visualization of spatial omics data☆53Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Python API and Jupyter widget for Vitessce☆44Updated this week
- ☆26Updated 7 months ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆19Updated last week
- ☆17Updated last year
- The official QuPath extension for InstanSeg☆16Updated last week
- ☆60Updated last week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- R package for visualization of highly multiplexed imaging data☆32Updated 10 months ago
- ☆32Updated last year
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆25Updated last week
- Static plotting for spatialdata☆57Updated this week
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆28Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 months ago
- Piecewise alignment for layers of mosaics☆24Updated 3 weeks ago
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆20Updated 3 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago