schienstockd / cecelia

Related projects: ⓘ

• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 2 years ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆21Updated 5 months ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆16Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆21Updated 11 months ago
• HelenaLC / SpatialData
  ☆14Updated 10 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆36Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆22Updated 4 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆11Updated last year
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated 3 months ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 11 months ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆14Updated 2 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last month
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆12Updated last year
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• KerenLab / CellSighter
  ☆28Updated 9 months ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆19Updated last month
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆19Updated last month
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆13Updated 7 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆32Updated last month
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• quantixed / TrackMateR
  Analysis of TrackMate XML outputs in R
  ☆11Updated 3 months ago
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆13Updated 5 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆37Updated 3 weeks ago
• ahklemm / ImageJMacro_Introduction
  A first intoduction to scripting in Fiji using the ImageJ Macro language.
  ☆22Updated 2 years ago
• scverse / spatialdata-io
  ☆35Updated last week
• haesleinhuepf / the-segmentation-game
  Gamified image segmentation quality estimation
  ☆17Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆18Updated this week
• BiAPoL / imagej-macro-cheat-sheet
  ☆19Updated 3 years ago
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆20Updated 7 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆12Updated 2 months ago