schienstockd / cecelia
Framework for image and flow cytometry analysis
☆12Updated this week
Alternatives and similar repositories for cecelia:
Users that are interested in cecelia are comparing it to the libraries listed below
- MethodsJ2☆14Updated 2 years ago
- QuPath extension for Cellsparse☆17Updated last month
- A plugin to visualise 3D spatial single cell omics☆21Updated 9 months ago
- Whole slide image registration through wsireg in napari.☆12Updated last year
- ☆17Updated last week
- Image registration (alignment) software for large microscopy images☆22Updated last year
- A relabeling tool for tiled segmentation with Dask☆12Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 5 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆17Updated this week
- Guides and code for 3D nuclear instance segmentation☆20Updated last week
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆29Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Piecewise alignment for layers of mosaics☆21Updated last month
- The official QuPath extension for InstanSeg☆11Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated last month
- QuPath extension to interactively align images☆20Updated last month
- Microsopic Image Analyzer (MIA)☆29Updated 9 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Interactive visualization of spatial omics data☆45Updated this week
- ilastik plugin for napari☆13Updated 9 months ago
- ☆36Updated this week
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- GIve easy, high-level access to ome-zarr fileset☆13Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated last week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago