labsyspharm / cylinterLinks
An Interactive Image Segmentation Filter for Multiplex Microscopy
☆31Updated 2 weeks ago
Alternatives and similar repositories for cylinter
Users that are interested in cylinter are comparing it to the libraries listed below
Sorting:
- Interactive visualization of spatial omics data☆64Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆59Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- ☆34Updated last year
- Python API and Jupyter widget for Vitessce☆52Updated last week
- A pipeline to transform images into valuable analysis items☆14Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Multiple-choice microscopy pipeline☆136Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆48Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated 2 months ago
- ☆68Updated last week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- comseg☆24Updated 6 months ago
- ☆18Updated last year
- Framework for image and flow cytometry analysis☆28Updated 3 weeks ago
- Raw format to OME-TIFF converter☆55Updated 2 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- Piecewise alignment for layers of mosaics☆28Updated last month
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆82Updated 3 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆35Updated last week
- A toolkit for processing multiplexed tissue images☆62Updated 2 weeks ago
- QuPath extension for Cellsparse☆19Updated 3 months ago
- ☆13Updated last week
- ☆27Updated 10 months ago
- ☆29Updated last year
- The official QuPath extension for InstanSeg☆24Updated last month
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 4 months ago