Alternatives and similar repositories for cylinter

Users that are interested in cylinter are comparing it to the libraries listed below

• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated last month
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆101Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 3 months ago
• CellProfiling / pipex
  A pipeline to transform images into valuable analysis items
  ☆17Updated 6 months ago
• KerenLab / CellSighter
  ☆36Updated 2 years ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆60Updated 2 months ago
• scverse / spatialdata-io
  ☆86Updated this week
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆144Updated last month
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆104Updated this week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆49Updated this week
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated last week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆20Updated 2 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆106Updated last week
• giovp / spatialdata-sandbox
  ☆14Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• nolanlab / REDSEA
  ☆18Updated last year
• fish-quant / ComSeg
  comseg
  ☆24Updated 11 months ago
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆73Updated 2 weeks ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆86Updated last month
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆38Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆31Updated 4 months ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆21Updated 2 years ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆67Updated last month
• UFISH-Team / U-FISH
  Deep learning based spot detection for FISH images.
  ☆27Updated last week
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆69Updated 2 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆46Updated 7 months ago