labsyspharm / cylinterLinks
An Interactive Image Segmentation Filter for Multiplex Microscopy
☆31Updated 6 months ago
Alternatives and similar repositories for cylinter
Users that are interested in cylinter are comparing it to the libraries listed below
Sorting:
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- Interactive visualization of spatial omics data☆64Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- ☆33Updated last year
- Python API and Jupyter widget for Vitessce☆50Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Multiple-choice microscopy pipeline☆135Updated last week
- comseg☆24Updated 5 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated 2 weeks ago
- ☆65Updated this week
- Framework for image and flow cytometry analysis☆28Updated this week
- A pipeline to transform images into valuable analysis items☆13Updated last month
- Piecewise alignment for layers of mosaics☆28Updated 3 weeks ago
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- ☆18Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated last week
- ☆12Updated 3 months ago
- A toolkit for processing multiplexed tissue images☆62Updated last week
- Deep learning based spot detection for FISH images.☆23Updated last month
- rna2seg☆17Updated 2 months ago
- QuPath extension to interactively align images☆24Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated this week