labsyspharm / cylinter
An Interactive Image Segmentation Filter for Multiplex Microscopy
☆28Updated last month
Alternatives and similar repositories for cylinter:
Users that are interested in cylinter are comparing it to the libraries listed below
- ☆30Updated last year
- Interactive visualization of spatial omics data☆51Updated this week
- Piecewise alignment for layers of mosaics☆23Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Integrated pipeline for multiplexed image analysis☆82Updated this week
- A plugin to visualise 3D spatial single cell omics☆22Updated 11 months ago
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- ☆50Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆51Updated last month
- ☆17Updated 11 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆23Updated this week
- QuPath extension to interactively align images☆22Updated 3 months ago
- Framework for image and flow cytometry analysis☆24Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- Raw format to OME-TIFF converter☆50Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- Python API and Jupyter widget for Vitessce☆44Updated last month
- Image registration (alignment) software for large microscopy images☆23Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated this week
- QuPath extension for Cellsparse☆18Updated 3 months ago
- ☆22Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆19Updated 7 months ago
- ☆12Updated last month
- comseg☆19Updated last month
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆33Updated 10 months ago
- A toolkit for processing multiplexed tissue images☆58Updated last week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆14Updated 3 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 2 weeks ago