labsyspharm / cylinterLinks
An Interactive Image Segmentation Filter for Multiplex Microscopy
☆30Updated 4 months ago
Alternatives and similar repositories for cylinter
Users that are interested in cylinter are comparing it to the libraries listed below
Sorting:
- Interactive visualization of spatial omics data☆58Updated last week
- ☆32Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Piecewise alignment for layers of mosaics☆24Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- A pipeline to transform images into valuable analysis items☆13Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆45Updated this week
- ☆62Updated last week
- Framework for image and flow cytometry analysis☆25Updated 2 weeks ago
- Python API and Jupyter widget for Vitessce☆45Updated 2 weeks ago
- comseg☆20Updated 3 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- QuPath extension to interactively align images☆23Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆15Updated last week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- ☆18Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 10 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- The official QuPath extension for InstanSeg☆17Updated 2 weeks ago
- QuPath extension for Cellsparse☆18Updated 3 weeks ago
- ☆17Updated last week
- ☆13Updated last month
- The 2023 version of cellPLATO☆15Updated 6 months ago
- ☆29Updated last year
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated this week