labsyspharm / cylinterLinks
An Interactive Image Segmentation Filter for Multiplex Microscopy
☆31Updated last month
Alternatives and similar repositories for cylinter
Users that are interested in cylinter are comparing it to the libraries listed below
Sorting:
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- Interactive visualization of spatial omics data☆70Updated last week
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Python API and Jupyter widget for Vitessce☆56Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- ☆34Updated last year
- ☆73Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- Framework for image and flow cytometry analysis☆30Updated 2 weeks ago
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- comseg☆24Updated 8 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- ☆18Updated last year
- A plugin to visualise 3D spatial single cell omics☆21Updated 4 months ago
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆13Updated last month
- A toolkit for processing multiplexed tissue images☆65Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- ☆29Updated last year
- Piecewise alignment for layers of mosaics☆29Updated last month
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- Deep learning based spot detection for FISH images.☆25Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆77Updated 2 weeks ago
- ☆27Updated last year
- Static plotting for spatialdata☆68Updated this week