An Interactive Image Segmentation Filter for Multiplex Microscopy
☆36Aug 28, 2026Updated last week
Alternatives and similar repositories for cylinter
Users that are interested in cylinter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Single-Cell Analysis Toolkit☆115Updated this week
- Multiple-choice microscopy pipeline☆156Updated this week
- ☆19Apr 5, 2024Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Python package for image-based profiling☆144Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆181Aug 7, 2026Updated 3 weeks ago
- Piecewise alignment for layers of mosaics☆62Aug 8, 2026Updated 3 weeks ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆108Aug 20, 2026Updated 2 weeks ago
- PAthological QUpath Obsession - QuPath and Python conversations☆137Apr 30, 2026Updated 4 months ago
- A low-impact profiler to figure out how much memory each task in Dask is using☆24Apr 10, 2023Updated 3 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆103Jul 4, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging☆18Aug 25, 2026Updated last week
- MIST-inspired microscope image stitching package☆82Jan 29, 2026Updated 7 months ago
- Interactive visualization of spatial omics data☆89Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆73Dec 2, 2025Updated 9 months ago
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago
- ☆101Updated this week
- Virtual Alignment of pathoLogy Image Series☆236Jun 25, 2025Updated last year
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆264Updated this week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆17Feb 6, 2026Updated 6 months ago
- ☆73Jan 18, 2023Updated 3 years ago
- A Snakemake pipeline for Xenium data analysis.☆28Jul 22, 2026Updated last month
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Read fcs files.☆11Nov 13, 2025Updated 9 months ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- ☆238Jul 30, 2026Updated last month
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline to transform images into valuable analysis items☆19Aug 19, 2026Updated 2 weeks ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆14Aug 3, 2023Updated 3 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- ☆26Jun 6, 2023Updated 3 years ago
- ☆105Mar 12, 2026Updated 5 months ago
- Speed up coding/extending image analysis in Python.☆37Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week