NHPatterson / wsiregLinks
multimodal whole slide image registration in a graph structure
☆87Updated last year
Alternatives and similar repositories for wsireg
Users that are interested in wsireg are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆25Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- Bio-Formats image file format to raw format converter☆94Updated last month
- ☆33Updated last year
- Raw format to OME-TIFF converter☆54Updated last month
- ☆32Updated 2 years ago
- QuPath extension for Cellsparse☆19Updated 2 months ago
- ☆172Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 5 months ago
- ☆84Updated 3 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 6 months ago
- version 1 scripts for CODA☆50Updated last year
- QuPath extension for Segment Anything Model (SAM)☆113Updated 4 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 11 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆142Updated 4 months ago
- ☆26Updated 2 months ago
- ☆23Updated 2 years ago
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Multiple-choice microscopy pipeline☆133Updated 4 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated 3 weeks ago
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- QuPath extension to interactively align images☆23Updated 2 weeks ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆74Updated last week
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 2 months ago
- The official QuPath extension for InstanSeg☆21Updated last week
- 3D segmentation for cells and organoids of 3D multichannel images☆17Updated 3 weeks ago
- An introduction to deepcell and deep learning☆150Updated 8 months ago
- Segment Anything for Histopathology☆34Updated last month