NHPatterson / wsiregLinks
multimodal whole slide image registration in a graph structure
☆97Updated last year
Alternatives and similar repositories for wsireg
Users that are interested in wsireg are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- ☆36Updated 2 years ago
- Bio-Formats image file format to raw format converter☆102Updated last week
- Cloud-based data annotation tools for biological images☆82Updated last year
- Raw format to OME-TIFF converter☆56Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆128Updated 3 months ago
- ☆32Updated 4 months ago
- Multiple-choice microscopy pipeline☆144Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆203Updated last week
- ☆30Updated last month
- ☆24Updated 2 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 8 months ago
- Integrated pipeline for multiplexed image analysis☆100Updated last week
- The official QuPath extension for InstanSeg☆29Updated 2 months ago
- ☆91Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆160Updated 4 months ago
- An introduction to deepcell and deep learning☆155Updated last year
- QuPath extension for Cellsparse☆19Updated 7 months ago
- QuPath extension to interactively align images☆26Updated 4 months ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated 5 months ago
- QuPath extension to run StarDist nucleus detection☆48Updated 5 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆152Updated last month
- Interactive visualization of spatial omics data☆73Updated last week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆84Updated 3 weeks ago
- Segment Anything for Histopathology☆55Updated 2 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year