multimodal whole slide image registration in a graph structure
☆102Jul 4, 2024Updated last year
Alternatives and similar repositories for wsireg
Users that are interested in wsireg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 2 years ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- Virtual Alignment of pathoLogy Image Series☆214Jun 25, 2025Updated 9 months ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 5 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 8 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Dec 6, 2022Updated 3 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Bio-Formats image file format to raw format converter☆104Apr 3, 2026Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Updated this week
- Piecewise alignment for layers of mosaics☆48Feb 18, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆65Apr 4, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Interactive visualization of spatial omics data☆82Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆230Updated this week
- A minimal Zarr image viewer based on Viv.☆189Updated this week
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 4 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Tools for computational pathology☆447Apr 1, 2026Updated last week
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 3 weeks ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆85Jul 11, 2024Updated last year
- Microscopy Image Cytometry Toolkit☆115Jul 15, 2022Updated 3 years ago
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated last month
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆244Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 9 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆27Dec 5, 2022Updated 3 years ago
- ☆218Feb 4, 2026Updated 2 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆340Apr 4, 2026Updated last week
- Mass spectrometry imaging and complementary techniques open collaboration☆20Dec 17, 2021Updated 4 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Mar 16, 2026Updated 3 weeks ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆71Jan 18, 2023Updated 3 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated 9 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆73Nov 21, 2022Updated 3 years ago