CODEX data processing code
☆12Jul 1, 2025Updated 8 months ago
Alternatives and similar repositories for codex-pipeline
Users that are interested in codex-pipeline are comparing it to the libraries listed below
Sorting:
- Learn morphological states of dynamic cells☆12Apr 16, 2023Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆18Jun 18, 2025Updated 8 months ago
- Multiple-choice microscopy pipeline☆147Updated this week
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 9 months ago
- A pixel classification based multiplexed image segmentation pipeline☆106Dec 5, 2023Updated 2 years ago
- Piecewise alignment for layers of mosaics☆36Feb 18, 2026Updated last week
- ☆10Jul 10, 2024Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Run TFLITE models on the web☆12Jan 2, 2022Updated 4 years ago
- R package for visualization of highly multiplexed imaging data☆34May 27, 2025Updated 9 months ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Aug 7, 2025Updated 6 months ago
- ☆13Feb 27, 2024Updated 2 years ago
- Results of the experiments performed for the paper "Open-Set Support Vector Machines".☆11Jul 6, 2023Updated 2 years ago
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆14Nov 22, 2022Updated 3 years ago
- ☆10Jan 9, 2025Updated last year
- TensorFlow implementation of GoogLeNet.☆11May 15, 2018Updated 7 years ago
- DeepREAL: A Deep Learning Powered Multi-scale Modeling Framework Towards Predicting Out-of-distribution Receptor Activity of Ligand Bindi…☆11Apr 23, 2022Updated 3 years ago
- Medical calculator for intensive care unit☆13Updated this week
- Histopathology Feature Extractors (2024)☆12Jun 14, 2024Updated last year
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- Real-time sushi detection app on iOS☆10Apr 9, 2018Updated 7 years ago
- transform H&E image into CK image using GAN (virtual staining)☆12Nov 24, 2021Updated 4 years ago
- ☆11May 16, 2023Updated 2 years ago
- ☆11Mar 2, 2021Updated 5 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- Scripts for building, training and validating CNNs for Connectomics☆13Mar 24, 2023Updated 2 years ago
- React-based web application for sepsis detection☆11Mar 10, 2019Updated 6 years ago
- ☆13Feb 17, 2022Updated 4 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- Implementation of efficient Graph-based Image segmentation paper☆10May 19, 2020Updated 5 years ago
- Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets☆12Mar 6, 2025Updated 11 months ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- ☆11Jan 17, 2025Updated last year
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆14Apr 14, 2025Updated 10 months ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆12Jun 4, 2023Updated 2 years ago
- ☆16Oct 24, 2024Updated last year
- ☆13Apr 27, 2022Updated 3 years ago