Lab for quantitative bioimage analysis experiments in Python
☆20Feb 16, 2026Updated 4 months ago
Alternatives and similar repositories for qubalab
Users that are interested in qubalab are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 6 months ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated last year
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆35Jun 24, 2026Updated last week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 6 months ago
- ☆225Feb 4, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PAthological QUpath Obsession - QuPath and Python conversations☆135Apr 30, 2026Updated 2 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated last week
- A fully scalable robust image feature extraction library.☆28Updated this week
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 9 months ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Jun 15, 2026Updated 2 weeks ago
- A napari plugin to analysis point spread functions.☆12Apr 27, 2026Updated 2 months ago
- Template to help create a new QuPath extension☆21Apr 23, 2026Updated 2 months ago
- Interprocess environment manager 🧊☆15May 11, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 months ago
- QuPath extension for Segment Anything Model (SAM)☆136Feb 15, 2026Updated 4 months ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 6 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆85Jul 11, 2024Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆23Apr 23, 2026Updated 2 months ago
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 23, 2026Updated last week
- Scientific Dataset Quality Control and Data Exploration Tool☆23Jun 24, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Jun 24, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Jupyter notebook based multiplex image processing pipeline.☆10Jun 23, 2026Updated last week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 7 months ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆35Mar 25, 2026Updated 3 months ago
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 2 months ago
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 3 years ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆119Updated this week
- Piecewise alignment for layers of mosaics☆59Jun 10, 2026Updated 3 weeks ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆16Feb 6, 2026Updated 4 months ago
- Create web-based OME-Zarr galleries☆25May 26, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- QuPath extension to run StarDist nucleus detection☆48Updated this week
- Converts whole slide images to DICOM format☆22Oct 9, 2025Updated 8 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 6 months ago
- Interface to the Bioformats Java library☆15Feb 17, 2026Updated 4 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jun 23, 2026Updated last week
- ☆22May 25, 2026Updated last month