qupath / qubalabLinks
Lab for quantitative bioimage analysis experiments in Python
☆13Updated 5 months ago
Alternatives and similar repositories for qubalab
Users that are interested in qubalab are comparing it to the libraries listed below
Sorting:
- QuPath extension for Cellsparse☆19Updated 2 months ago
- ☆26Updated 2 months ago
- The official QuPath extension for InstanSeg☆21Updated last week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Piecewise alignment for layers of mosaics☆25Updated last week
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 9 months ago
- ☆16Updated 5 months ago
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆74Updated last week
- Microsopic Image Analyzer (MIA)☆29Updated last year
- StarDist plugin for napari☆38Updated 10 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 2 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 3 weeks ago
- Bio-Formats image file format to raw format converter☆94Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 9 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- A template repo used to make new napari plugins☆26Updated last week
- ☆24Updated 2 years ago
- MethodsJ2☆14Updated 3 years ago
- The ImageJ wiki☆27Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago
- multimodal whole slide image registration in a graph structure☆87Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago