qupath / qubalabLinks
Lab for quantitative bioimage analysis experiments in Python
☆13Updated 4 months ago
Alternatives and similar repositories for qubalab
Users that are interested in qubalab are comparing it to the libraries listed below
Sorting:
- QuPath extension for Cellsparse☆18Updated last month
- ☆26Updated last month
- The official QuPath extension for InstanSeg☆19Updated this week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Piecewise alignment for layers of mosaics☆25Updated last month
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆72Updated last month
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- ☆16Updated 4 months ago
- ☆12Updated last year
- Microsopic Image Analyzer (MIA)☆29Updated last year
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago
- Raw format to OME-TIFF converter☆53Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated this week
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆25Updated 8 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- StarDist plugin for napari☆38Updated 10 months ago
- ☆15Updated 2 years ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 9 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month