qupath / qubalabLinks
Lab for quantitative bioimage analysis experiments in Python
☆18Updated last week
Alternatives and similar repositories for qubalab
Users that are interested in qubalab are comparing it to the libraries listed below
Sorting:
- QuPath extension for Cellsparse☆19Updated 7 months ago
- The official QuPath extension for InstanSeg☆28Updated last month
- ☆30Updated last month
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 7 months ago
- GPU-accelerated image processing in QuPath☆16Updated 4 years ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- Microsopic Image Analyzer (MIA)☆28Updated 3 months ago
- StarDist plugin for napari☆38Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Bio-Formats image file format to raw format converter☆102Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated 2 weeks ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆74Updated 3 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆34Updated this week
- multimodal whole slide image registration in a graph structure☆96Updated last year
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- ☆35Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆33Updated 2 weeks ago
- Scientific Dataset Quality Control and Data Exploration Tool☆19Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- QuPath extension to interactively align images☆26Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆84Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago