Alternatives and similar repositories for minerva-author

Users that are interested in minerva-author are comparing it to the libraries listed below

• snap-stanford / stellar
  ☆70Updated 2 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 6 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• Henrik86 / Topological-tumour-graphs
  ☆11Updated 5 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 3 months ago
• AI4SCR / ATHENA
  ☆35Updated 2 weeks ago
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆37Updated 3 years ago
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆67Updated 3 weeks ago
• joshwillmoore1 / MuSpAn-Public
  A public MuSpAn page for community discussions and issue reporting.
  ☆18Updated 2 months ago
• qalid7 / compath
  deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…
  ☆52Updated 5 years ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• BiomedicalMachineLearning / Spacell
  ☆27Updated 6 years ago
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆103Updated 2 years ago
• labsyspharm / CRC_atlas_2022
  ☆18Updated 8 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆69Updated 2 months ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆25Updated 8 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆100Updated 2 weeks ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆106Updated 3 weeks ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Updated 5 years ago
• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago
• ElementoLab / utag
  ☆40Updated last year
• flatironinstitute / st_gridnet
  A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…
  ☆25Updated 4 years ago
• SBU-BMI / u24_lymphocyte
  ☆32Updated 4 years ago
• calico / spatial_lda
  Probabilistic topic model for identifying cellular micro-environments.
  ☆28Updated 2 years ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆32Updated 8 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated last month
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆44Updated 7 months ago
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆172Updated this week