labsyspharm / minerva-authorLinks
Tool to create images and configuration files for Minerva-Story
☆16Updated 4 months ago
Alternatives and similar repositories for minerva-author
Users that are interested in minerva-author are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- ☆69Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- ☆16Updated 6 months ago
- ☆11Updated 5 years ago
- A toolkit for processing multiplexed tissue images☆64Updated this week
- ☆39Updated last year
- ☆35Updated 2 weeks ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 4 months ago
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- ☆26Updated 5 years ago
- Integrated pipeline for multiplexed image analysis☆96Updated 6 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆55Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆29Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- A public MuSpAn page for community discussions and issue reporting.☆13Updated last week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- MERFISH decoding software☆26Updated last month
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 5 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- CODEX data processing code☆12Updated 3 months ago