Alternatives and similar repositories for zarpaint

Users that are interested in zarpaint are comparing it to the libraries listed below

• andy-sweet / napari-metadata
  A napari plugin to view and edit metadata
  ☆10Updated last year
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated last week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 2 months ago
• multiview-stitcher / napari-stitcher
  A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
  ☆16Updated last month
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆25Updated last week
• fractal-analytics-platform / ngio
  NGIO is a Python library to streamline OME-Zarr image analysis workflows.
  ☆13Updated this week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 9 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆34Updated 3 weeks ago
• fmi-faim / faim-ipa
  A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
  ☆13Updated last week
• haesleinhuepf / natari
  Napari gaming
  ☆17Updated 3 years ago
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆17Updated 2 weeks ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆16Updated 2 weeks ago
• AbigailMcGovern / iterseg
  napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)
  ☆9Updated last year
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated 4 months ago
• jni / affinder
  Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
  ☆20Updated last month
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆31Updated last month
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated last week
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆10Updated last week
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated this week
• haesleinhuepf / napari-assistant
  ☆24Updated last week
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last week
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆37Updated last week
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆11Updated 5 months ago
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆20Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated last month
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 2 months ago
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆26Updated last week
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated last year
• guiwitz / napari-annotation-project
  A minimalistic napari plugin to create and save regions of interest and annotations on series of images
  ☆15Updated last month