Paint segmentations directly to on-disk/remote zarr arrays
☆16Mar 25, 2026Updated last month
Alternatives and similar repositories for zarpaint
Users that are interested in zarpaint are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin to view and edit layer metadata☆13May 1, 2026Updated last week
- A fully scalable robust image feature extraction library.☆28Apr 27, 2026Updated last week
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆33Mar 25, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆14Jan 25, 2024Updated 2 years ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 3 months ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Apr 2, 2026Updated last month
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13May 1, 2026Updated last week
- ☆23Mar 26, 2021Updated 5 years ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆52Apr 28, 2026Updated last week
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- Create web-based OME-Zarr galleries☆24Apr 21, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Apr 20, 2026Updated 2 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 9 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 9 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Acquire: a multi-camera video streaming software focusing on microscopy☆24Oct 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Interface to the Bioformats Java library☆14Feb 17, 2026Updated 2 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 4 months ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Command-line client for Fractal☆48Updated this week
- Particle tracking by solving linear assignment problem.☆64Apr 1, 2026Updated last month
- Light microscopy simulation in python.☆45Updated this week
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- ☆14Jan 22, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference implementation of the Graph Exchange File Format☆39Updated this week
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated last year
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Apr 27, 2026Updated last week
- Documentation for napari (other than API docs)☆12May 1, 2026Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆64Apr 9, 2026Updated 3 weeks ago
- Spotiflow plugin for napari☆17Feb 2, 2026Updated 3 months ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago