☆105Mar 12, 2026Updated 3 months ago
Alternatives and similar repositories for BaSiCPy
Users that are interested in BaSiCPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- ☆17Feb 5, 2026Updated 5 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆67Mar 12, 2025Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆176May 14, 2026Updated last month
- Official implementation of CytoSAE: Interpretable Cell Embeddings for Hematology☆26Jul 17, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Single cell Morphology Quality Control (coSMicQC)☆11Jun 22, 2026Updated last week
- A vision language model for gigapixel whole slide images in histopathology☆99Sep 4, 2025Updated 10 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆86Feb 6, 2024Updated 2 years ago
- An introduction to OME-Zarr for big bioimaging data☆27Updated this week
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 3 months ago
- membrane segmentation in 3D for cryo-ET☆92Feb 27, 2026Updated 4 months ago
- A napari plugin for zarr backed OME-NGFF images☆52May 28, 2026Updated last month
- MIST-inspired microscope image stitching package☆82Jan 29, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆119Jun 26, 2026Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆198Updated this week
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆13May 13, 2022Updated 4 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Piecewise alignment for layers of mosaics☆59Jun 10, 2026Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 10 months ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆245Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆80Jun 1, 2026Updated last month
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Jun 25, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Jun 24, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Find profile pairs and compute retrieval metrics between them.☆22May 26, 2026Updated last month
- ☆38Mar 22, 2024Updated 2 years ago
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆34Apr 9, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated last month
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jun 23, 2026Updated last week
- Python package for image-based profiling☆142Updated this week
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,259Jun 14, 2026Updated 3 weeks ago
- ☆22May 25, 2026Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 9 months ago