peng-lab / BaSiCPyLinks
☆85Updated 6 months ago
Alternatives and similar repositories for BaSiCPy
Users that are interested in BaSiCPy are comparing it to the libraries listed below
Sorting:
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆151Updated last month
- Accurate and efficient spot detection for microscopy data☆100Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆180Updated this week
- StarDist plugin for napari☆39Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Cell tracking and segmentation software☆147Updated this week
- ☆51Updated 5 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆69Updated 3 weeks ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated this week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆219Updated 8 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- Command-line client for Fractal☆46Updated this week
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆80Updated 6 months ago
- Bio-Formats image file format to raw format converter☆98Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆46Updated last week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 5 months ago