Alternatives and similar repositories for BaSiCPy

Users that are interested in BaSiCPy are comparing it to the libraries listed below

• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆156Updated 3 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆111Updated this week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆109Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆102Updated 2 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆96Updated last year
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated last month
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated 2 months ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated this week
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 2 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆186Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆82Updated 2 weeks ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆157Updated 2 weeks ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 3 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 2 months ago
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆74Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆34Updated last month
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• Euro-BioImaging / EuBI-Bridge
  A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…
  ☆17Updated last week
• maweigert / spotipy
  ☆12Updated last year
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆95Updated this week
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆55Updated last week
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 7 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆135Updated 5 years ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆88Updated this week