labsyspharm / orion-crc
☆15Updated last year
Alternatives and similar repositories for orion-crc
Users that are interested in orion-crc are comparing it to the libraries listed below
Sorting:
- GrandQC tool for tissue detection and quality control in pathology☆46Updated 2 months ago
- Piecewise alignment for layers of mosaics☆24Updated last month
- version 1 scripts for CODA☆44Updated last year
- ☆21Updated 2 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 months ago
- ☆14Updated 2 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆60Updated 3 months ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆14Updated 9 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆54Updated last year
- Segment Anything for Histopathology☆27Updated last week
- A tool for rapidly labeling objects using deep learning feature embedding☆32Updated 8 months ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated 3 weeks ago
- UNet script, model, sample data☆13Updated 2 months ago
- ☆23Updated last year
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- Transfer trained StarDist models across imaging modalities☆3Updated 7 months ago
- multimodal whole slide image registration in a graph structure☆85Updated 10 months ago
- Pipeline for computational pathology☆35Updated last year
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆15Updated last year
- ☆32Updated last year
- Re-stained whole slide image alignment☆33Updated last year
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 4 years ago
- The official QuPath extension for InstanSeg☆16Updated 2 weeks ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆20Updated 2 years ago
- ☆11Updated 5 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated last month
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago