labsyspharm / orion-crcView external linksLinks
☆27Jun 24, 2025Updated 7 months ago
Alternatives and similar repositories for orion-crc
Users that are interested in orion-crc are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆36Sep 2, 2025Updated 5 months ago
- ☆13Aug 30, 2024Updated last year
- OME-TIFF IO in python☆26Apr 10, 2025Updated 10 months ago
- ☆20Dec 20, 2022Updated 3 years ago
- QuPath extension to work with images through OMERO's web API☆10Updated this week
- UNet script, model, sample data☆14Feb 19, 2025Updated 11 months ago
- ☆27Oct 23, 2025Updated 3 months ago
- Pan-cancer quantitative histopathology analysis using deep learning☆12Mar 1, 2022Updated 3 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆37Feb 6, 2026Updated last week
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated last year
- an interactive explorer for flow cytometry data☆19Jul 8, 2024Updated last year
- Example CellProfiler pipelines.☆17Jul 19, 2022Updated 3 years ago
- ☆18Jan 27, 2025Updated last year
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 4, 2026Updated last week
- ☆19Apr 8, 2025Updated 10 months ago
- ☆18May 7, 2024Updated last year
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- ☆68Sep 23, 2024Updated last year
- DeeperHistReg - Source Code☆92Apr 26, 2024Updated last year
- Awesome Domain Generalization for Computational Pathology☆23Nov 7, 2024Updated last year
- MIPHEI-ViT: Repository to train Image-to-Image H&E to Immunofluorescence models☆27Dec 3, 2025Updated 2 months ago
- ☆17Aug 8, 2022Updated 3 years ago
- A whole-slide image reader for TensorFlow☆24Nov 24, 2025Updated 2 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated this week
- ☆30Jan 19, 2026Updated 3 weeks ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Jul 8, 2024Updated last year
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Apr 4, 2022Updated 3 years ago
- version 1 scripts for CODA☆60May 7, 2024Updated last year
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆113Jan 24, 2025Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Dec 2, 2025Updated 2 months ago
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated last month
- Probabilistic topic model for identifying cellular micro-environments.☆28Jul 6, 2023Updated 2 years ago
- Tools for computational pathology☆442Oct 24, 2025Updated 3 months ago
- Virtual Alignment of pathoLogy Image Series☆208Jun 25, 2025Updated 7 months ago
- This module allows users to analyze k-means & hierarchical clustering, and visualize results of Principal Component, Correspondence Analy…☆10Jan 7, 2026Updated last month
- This module is a tool for calculating correlations such as Partial, Tetrachoric, Intraclass correlation coefficients, Bootstrap agreement…☆11Jan 31, 2026Updated 2 weeks ago
- ☆35Jul 21, 2021Updated 4 years ago
- A napari plugin for zarr backed OME-NGFF images☆43Jan 19, 2026Updated 3 weeks ago
- An open-source digital pathology based rapid image annotation tool☆90Jan 27, 2026Updated 2 weeks ago