labsyspharm / orion-crc
☆12Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for orion-crc
- Piecewise alignment for layers of mosaics☆20Updated 2 weeks ago
- version 1 scripts for CODA☆37Updated 6 months ago
- ☆12Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆34Updated 2 weeks ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆22Updated 2 months ago
- ☆40Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆59Updated 4 months ago
- Pipeline for computational pathology☆34Updated 10 months ago
- A Python library for deep learning on whole-slide images☆50Updated 3 years ago
- Virtual Alignment of pathoLogy Image Series☆123Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated 3 weeks ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 3 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆29Updated last year
- Inference code for HoVer-NeXt☆22Updated 2 months ago
- Data and code to accompany our Nature publication☆43Updated 2 years ago
- Image-translation-assisted segmentation in 3D☆25Updated 2 years ago
- ☆21Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆52Updated 5 months ago
- Solid Tumor Associative Modeling in Pathology☆47Updated 2 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆49Updated last week
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆27Updated 6 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆48Updated 8 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆28Updated 9 months ago
- Re-stained whole slide image alignment☆31Updated last year
- A vision language model for gigapixel whole slide images in histopathology☆27Updated last month
- ☆45Updated 2 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆29Updated last month
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆18Updated 7 months ago