RAnking Markers for CEll Segmentation
☆12Feb 22, 2022Updated 4 years ago
Alternatives and similar repositories for ramces
Users that are interested in ramces are comparing it to the libraries listed below
Sorting:
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 2 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 6 months ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated last year
- ☆13Aug 16, 2024Updated last year
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆13Updated this week
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated 2 months ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- ☆30Oct 4, 2024Updated last year
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Imaris file format reader☆14Aug 20, 2025Updated 6 months ago
- ☆29Apr 26, 2024Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- ☆19Apr 8, 2025Updated 10 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Mar 12, 2024Updated last year
- Official Implementation of ECONet: Efficient Convolutional Online Likelihood Network for Interactive Segmentation☆17Mar 28, 2023Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 5 months ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Dec 8, 2022Updated 3 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆27Jun 24, 2025Updated 8 months ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- MultiModal Big Image Data Sharing and Exploration☆18Jan 13, 2023Updated 3 years ago
- ☆21Mar 22, 2023Updated 2 years ago
- ☆18Apr 5, 2024Updated last year
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- ☆20Updated this week
- ☆21Dec 30, 2025Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- GPU-accelerated stain normalization command line tool☆24Oct 19, 2023Updated 2 years ago
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- ☆28Jan 4, 2024Updated 2 years ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 4 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 3 months ago
- ☆33Oct 10, 2025Updated 4 months ago
- ☆11Jul 3, 2022Updated 3 years ago