RAnking Markers for CEll Segmentation
☆12Feb 22, 2022Updated 4 years ago
Alternatives and similar repositories for ramces
Users that are interested in ramces are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated last week
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Imaris file format reader☆14Aug 20, 2025Updated 7 months ago
- ☆19Apr 8, 2025Updated 11 months ago
- A collection of materials used in Undergraduate Bioinformatics Club (UBIC) workshops at UCSD.☆49Feb 19, 2026Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 6 months ago
- ☆18Apr 5, 2024Updated last year
- ☆13Aug 16, 2024Updated last year
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆13Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 7 months ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ☆29Apr 26, 2024Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 2 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆30Jun 24, 2025Updated 9 months ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated last year
- ☆30Oct 4, 2024Updated last year
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- ☆21Mar 22, 2023Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆19Jan 13, 2023Updated 3 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- Guiding Attention for Self-Supervised Learning with Transformers☆12Feb 8, 2023Updated 3 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Dec 8, 2022Updated 3 years ago
- Piecewise alignment for layers of mosaics☆41Feb 18, 2026Updated last month
- Sofipackage is a Matlab-based software for super-resolution optical fluctuation imaging (SOFI) analysis.☆14Jul 21, 2022Updated 3 years ago
- Code and webpages for our study on teaching humans to defer to an AI☆12Nov 6, 2023Updated 2 years ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- ☆23Mar 26, 2021Updated 4 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 5 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last month
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated last month
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Mar 12, 2024Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆103Jan 7, 2026Updated 2 months ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year