Alternatives and similar repositories for mcmicro

Users that are interested in mcmicro are comparing it to the libraries listed below

• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆99Updated 7 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆65Updated 5 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆71Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆103Updated 4 months ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆65Updated this week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆38Updated last year
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆100Updated this week
• fish-quant / ComSeg
  comseg
  ☆24Updated 9 months ago
• KerenLab / CellSighter
  ☆35Updated last year
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆101Updated last year
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• CellProfiling / pipex
  A pipeline to transform images into valuable analysis items
  ☆15Updated 4 months ago
• scverse / spatialdata-io
  ☆75Updated this week
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆242Updated this week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last month
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆69Updated 2 weeks ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆43Updated last week
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆68Updated 2 years ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆62Updated last year
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆156Updated this week
• TheJacksonLaboratory / STQ
  Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
  ☆21Updated 6 months ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆28Updated 3 weeks ago
• hubmapconsortium / codex-pipeline
  CODEX data processing code
  ☆12Updated 4 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆95Updated last year
• HiDiHlabs / ssam
  ☆27Updated last year
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆154Updated last year
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated 2 weeks ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆34Updated last year
• nolanlab / REDSEA
  ☆18Updated last year