labsyspharm / mcmicroLinks
Multiple-choice microscopy pipeline
☆135Updated this week
Alternatives and similar repositories for mcmicro
Users that are interested in mcmicro are comparing it to the libraries listed below
Sorting:
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆62Updated 4 months ago
- Interactive visualization of spatial omics data☆67Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- comseg☆24Updated 7 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆34Updated last year
- Accessible and interoperable whole slide image analysis☆137Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- A toolkit for processing multiplexed tissue images☆64Updated last week
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- CODEX data processing code☆12Updated 3 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆85Updated last week
- QuPath extension to run StarDist nucleus detection☆46Updated 3 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆232Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- A pipeline to transform images into valuable analysis items☆15Updated 3 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 4 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆31Updated 3 months ago
- ☆27Updated 11 months ago
- An introduction to deepcell and deep learning☆153Updated 11 months ago
- ☆72Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week