Multiple-choice microscopy pipeline
☆155Jun 16, 2026Updated last month
Alternatives and similar repositories for mcmicro
Users that are interested in mcmicro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆180May 14, 2026Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Apr 9, 2026Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- CODEX data processing code☆12Jul 1, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆382Updated this week
- Integrated pipeline for multiplexed image analysis☆107Jan 7, 2026Updated 6 months ago
- Piecewise alignment for layers of mosaics☆61Jul 15, 2026Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated last month
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆33Jul 10, 2026Updated 2 weeks ago
- Microscopy Image Cytometry Toolkit☆116Jul 15, 2022Updated 4 years ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆18Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Interactive visualization of spatial omics data☆87Jul 2, 2026Updated 3 weeks ago
- Deep Learning Library for Single Cell Analysis☆476Jun 4, 2026Updated last month
- Spatial Single Cell Analysis in Python☆587Updated this week
- A napari plugin for zarr backed OME-NGFF images☆53Updated this week
- Spatial omics analysis and visualization library☆27Updated this week
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Command-line client for Fractal☆49Updated this week
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆260Updated this week
- ☆20Apr 8, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 11 months ago
- A pixel classification based multiplexed image segmentation pipeline☆107Dec 5, 2023Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆69Jul 13, 2026Updated last week
- ☆100Jul 2, 2026Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 11 months ago
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- ☆27Oct 23, 2025Updated 9 months ago
- ☆44May 11, 2026Updated 2 months ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated 2 years ago
- A minimal Zarr image viewer based on Viv.☆198Jun 22, 2026Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆51Jun 11, 2026Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- ☆30Oct 4, 2024Updated last year
- multimodal whole slide image registration in a graph structure☆103Jul 4, 2024Updated 2 years ago
- ☆18May 15, 2026Updated 2 months ago