Multiple-choice microscopy pipeline
☆149Feb 27, 2026Updated last month
Alternatives and similar repositories for mcmicro
Users that are interested in mcmicro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Apr 10, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Apr 9, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆65Apr 4, 2026Updated last week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Feb 17, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- CODEX data processing code☆12Jul 1, 2025Updated 9 months ago
- ☆20Apr 8, 2025Updated last year
- Integrated pipeline for multiplexed image analysis☆105Jan 7, 2026Updated 3 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Feb 28, 2026Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 25, 2025Updated 9 months ago
- An open and interoperable data framework for spatial omics data☆360Apr 6, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆46Updated this week
- ☆27Oct 23, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Microscopy Image Cytometry Toolkit☆115Jul 15, 2022Updated 3 years ago
- Deep Learning Library for Single Cell Analysis☆474Aug 30, 2024Updated last year
- Spatial Single Cell Analysis in Python☆562Updated this week
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 10 months ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆244Updated this week
- Command-line client for Fractal☆49Updated this week
- ☆92Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 8 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pixel classification based multiplexed image segmentation pipeline☆106Dec 5, 2023Updated 2 years ago
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- A toolkit for processing multiplexed tissue images☆68Apr 6, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Apr 8, 2026Updated last week
- Piecewise alignment for layers of mosaics☆50Feb 18, 2026Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆167Mar 16, 2026Updated last month
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- R package for visualization of highly multiplexed imaging data☆35May 27, 2025Updated 10 months ago
- Spatial omics analysis and visualization library☆24Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A minimal Zarr image viewer based on Viv.☆189Apr 6, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 5 months ago
- Interactive visualization of spatial omics data☆83Updated this week
- Static plotting for spatialdata☆78Apr 8, 2026Updated last week
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated last year
- ☆30Oct 4, 2024Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year