labsyspharm / mcmicro
Multiple-choice microscopy pipeline
☆123Updated 2 weeks ago
Alternatives and similar repositories for mcmicro:
Users that are interested in mcmicro are comparing it to the libraries listed below
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- Integrated pipeline for multiplexed image analysis☆84Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- A pixel classification based multiplexed image segmentation pipeline☆91Updated last year
- ☆30Updated last year
- Interactive visualization of spatial omics data☆51Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆40Updated 8 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆33Updated 10 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Piecewise alignment for layers of mosaics☆23Updated 3 months ago
- A toolkit for processing multiplexed tissue images☆58Updated 2 weeks ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆51Updated last month
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆173Updated this week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- ☆27Updated 5 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- R package for visualization of highly multiplexed imaging data☆32Updated 8 months ago
- ☆29Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆72Updated last year
- CellProfiler tutorial pipelines and images☆93Updated this week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆15Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆76Updated 3 weeks ago
- QuPath extension to run StarDist nucleus detection☆39Updated last month
- comseg☆19Updated last month