AstroPathJHU / AstroPathPipelineLinks
The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
☆19Updated 2 months ago
Alternatives and similar repositories for AstroPathPipeline
Users that are interested in AstroPathPipeline are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆25Updated last month
- GrandQC tool for tissue detection and quality control in pathology☆49Updated 3 months ago
- ☆20Updated 2 years ago
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- version 1 scripts for CODA☆48Updated last year
- Pipeline for computational pathology☆35Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- ☆33Updated last year
- ☆23Updated 2 years ago
- QuPath extension to run StarDist nucleus detection☆40Updated this week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated 2 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 11 months ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆16Updated last year
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- multimodal whole slide image registration in a graph structure☆87Updated 11 months ago
- Segment Anything for Histopathology☆33Updated last week
- ☆18Updated last year
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- ☆15Updated last year
- Re-stained whole slide image alignment☆33Updated last year
- CODEX data processing code☆12Updated last week
- ☆31Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- ☆48Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- ☆36Updated last year
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- comseg☆21Updated 4 months ago