The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
☆19Apr 21, 2025Updated 11 months ago
Alternatives and similar repositories for AstroPathPipeline
Users that are interested in AstroPathPipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Piecewise alignment for layers of mosaics☆48Feb 18, 2026Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated last month
- Variance pooling to incorporate ITH in CPath models - MICCAI 2022☆26Sep 27, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- macOS menu bar app to check for COVID-19 vaccine availability at CVS stores.☆13Mar 24, 2021Updated 5 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆240Feb 7, 2023Updated 3 years ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆53May 27, 2020Updated 5 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- ☆16Jul 8, 2024Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 2 weeks ago
- Helper functions for working with inForm data.☆22May 3, 2022Updated 3 years ago
- ☆18Apr 5, 2024Updated 2 years ago
- Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning☆12Nov 29, 2023Updated 2 years ago
- Federated Learning for Computational Pathology - Medical Image Analysis☆50Feb 9, 2022Updated 4 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Spectral unmixing of highly mixed multispectral flow and image cytometry data.☆17Mar 15, 2023Updated 3 years ago
- Scope2Screen is an open-source web-application for focus+context exploration and annotation of whole-slide, high-plex, tissue images.☆15Jun 1, 2023Updated 2 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Jan 9, 2023Updated 3 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆111Jun 9, 2023Updated 2 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Nov 3, 2022Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Mar 14, 2026Updated 3 weeks ago
- PyTorch implementation of GCMAE☆38Jul 8, 2024Updated last year
- GLSL shader for testing color science and palette generation algorithms interactively☆24Sep 24, 2021Updated 4 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 3 months ago
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- Tutorial to start working with Multiple Instance Learning☆14Jul 5, 2023Updated 2 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆73Nov 21, 2022Updated 3 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆182Nov 1, 2021Updated 4 years ago
- ☆94Mar 12, 2026Updated 3 weeks ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- image stacks in python (multi-page tiff), with depth color coding.☆19Jun 2, 2022Updated 3 years ago