murphygroup / CellSegmentationEvaluatorLinks
Evaluating the quality of a cell segmentation method without reference.
☆12Updated 3 months ago
Alternatives and similar repositories for CellSegmentationEvaluator
Users that are interested in CellSegmentationEvaluator are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 months ago
- QuPath extension for Cellsparse☆19Updated 6 months ago
- Napari plugin for vollseg☆15Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- dask empowered fast4dreg☆15Updated 11 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated this week
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Piecewise alignment for layers of mosaics☆29Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆16Updated last year
- ☆25Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆108Updated last month
- ☆15Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆28Updated this week
- ☆20Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A template repo used to make new napari plugins☆28Updated this week
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- StarDist plugin for napari☆39Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago