Evaluating the quality of a cell segmentation method without reference.
☆13Jul 26, 2025Updated 10 months ago
Alternatives and similar repositories for CellSegmentationEvaluator
Users that are interested in CellSegmentationEvaluator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated last year
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- ☆38May 29, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- ☆24May 16, 2023Updated 3 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- ☆19May 12, 2026Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- ☆13Aug 16, 2024Updated last year
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- A pipeline to transform images into valuable analysis items☆19May 26, 2026Updated 2 weeks ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Linking napari layers with Matplotlib plots☆43Jun 2, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- A napari plugin for clustering objects according to their properties.☆90Jun 1, 2026Updated last week
- ☆30Oct 4, 2024Updated last year
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 months ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- ☆14Jan 22, 2026Updated 4 months ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 6 months ago
- ☆22May 25, 2026Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 5 months ago
- Automatically annotate cell types, consistently across samples.☆23Updated this week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 8 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Mar 14, 2021Updated 5 years ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Speed up coding/extending image analysis in Python.☆37May 9, 2026Updated last month
- Reference implementation of the Graph Exchange File Format☆39Jun 1, 2026Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 10 months ago
- ☆52May 1, 2025Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- napari plugin for annotation using Segment Anything (SAM) for instance segmentation and dataset creation☆30Updated this week