murphygroup / CellSegmentationEvaluatorLinks
Evaluating the quality of a cell segmentation method without reference.
☆12Updated 2 weeks ago
Alternatives and similar repositories for CellSegmentationEvaluator
Users that are interested in CellSegmentationEvaluator are comparing it to the libraries listed below
Sorting:
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- QuPath extension for Cellsparse☆19Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆11Updated last week
- ☆23Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Piecewise alignment for layers of mosaics☆28Updated last month
- dask empowered fast4dreg☆11Updated 8 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago
- Napari plugin for vollseg☆14Updated 3 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- ☆34Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 8 months ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 10 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- StarDist plugin for napari☆40Updated 11 months ago
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A template repo used to make new napari plugins☆26Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 3 months ago
- Command-line client for Fractal☆46Updated last week
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- ☆15Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year