labsyspharm / ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
☆136Updated last month
Alternatives and similar repositories for ashlar:
Users that are interested in ashlar are comparing it to the libraries listed below
- ☆68Updated this week
- MIST-inspired microscope image stitching package☆70Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated 2 weeks ago
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆80Updated this week
- Browse your OMERO database from within napari.☆36Updated this week
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆146Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- StarDist plugin for napari☆37Updated 6 months ago
- Accurate and efficient spot detection for microscopy data☆72Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆46Updated 2 months ago
- StarDist plugin for ImageJ☆29Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆133Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- The 2023 version of cellPLATO☆14Updated 4 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- ☆47Updated 5 months ago
- CellProfiler tutorial pipelines and images☆93Updated this week
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- Python module utilizing libCZI for reading Zeiss CZI files.☆37Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago