ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
☆166Feb 19, 2026Updated last month
Alternatives and similar repositories for ashlar
Users that are interested in ashlar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MIST-inspired microscope image stitching package☆81Jan 29, 2026Updated last month
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated 3 weeks ago
- ☆94Mar 12, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated last month
- Microscopy Image Stitching Tool☆164Aug 15, 2025Updated 7 months ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated last month
- Piecewise alignment for layers of mosaics☆41Feb 18, 2026Updated last month
- A minimal Zarr image viewer based on Viv.☆186Mar 17, 2026Updated last week
- Montaging for microscopy imaging files☆30Mar 12, 2026Updated last week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆108Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆227Updated this week
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆103Jan 7, 2026Updated 2 months ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆101Jul 4, 2024Updated last year
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆65Mar 12, 2025Updated last year
- Python control of micro-manager for customized data acquisition☆179Mar 13, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 7 months ago
- Bio-Formats image file format to raw format converter☆103Mar 17, 2026Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 7 months ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆55May 8, 2024Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆62Mar 16, 2026Updated last week
- Read and write life sciences file formats☆142Jun 12, 2025Updated 9 months ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆75Mar 2, 2026Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108Mar 16, 2026Updated last week
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆215Feb 4, 2026Updated last month
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆338Updated this week
- A napari plugin for zarr backed OME-NGFF images☆46Mar 17, 2026Updated last week
- ☆42Mar 12, 2026Updated last week
- ☆28Jun 24, 2025Updated 9 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Sep 21, 2021Updated 4 years ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month