Alternatives and similar repositories for ashlar

Users that are interested in ashlar are comparing it to the libraries listed below

• peng-lab / BaSiCPy
  ☆91Updated last month
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆102Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated last week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆110Updated last week
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 3 weeks ago
• yfukai / m2stitch
  MIST-inspired microscope image stitching package
  ☆80Updated last year
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated 3 weeks ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated 11 months ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆99Updated last week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 6 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆113Updated 3 weeks ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 2 years ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated 2 weeks ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated 2 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆157Updated 3 weeks ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆57Updated last month
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆97Updated last year
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 2 months ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆89Updated 3 weeks ago
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated 3 weeks ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 7 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆83Updated last month
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago