ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
☆175May 14, 2026Updated last month
Alternatives and similar repositories for ashlar
Users that are interested in ashlar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MIST-inspired microscope image stitching package☆82Jan 29, 2026Updated 5 months ago
- Multiple-choice microscopy pipeline☆154Jun 16, 2026Updated 2 weeks ago
- ☆105Mar 12, 2026Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆34Apr 9, 2026Updated 2 months ago
- Microscopy Image Stitching Tool☆174Aug 15, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 3 months ago
- Piecewise alignment for layers of mosaics☆59Jun 10, 2026Updated 3 weeks ago
- A minimal Zarr image viewer based on Viv.☆196Jun 22, 2026Updated last week
- Montaging for microscopy imaging files☆31Apr 25, 2026Updated 2 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆244Jun 23, 2026Updated last week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆119Jun 26, 2026Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆107Jan 7, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Interprocess environment manager 🧊☆15May 11, 2026Updated last month
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆102Jul 4, 2024Updated 2 years ago
- mcib3d core library for 3D ImageJ suite☆16Oct 6, 2022Updated 3 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆67Mar 12, 2025Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- Python control of micro-manager for customized data acquisition☆184Jun 17, 2026Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 10 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated 10 months ago
- Bio-Formats image file format to raw format converter☆109Updated this week
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated 2 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 7 months ago
- Read and write life sciences file formats☆142Jun 12, 2025Updated last year
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 3 weeks ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆78Jun 1, 2026Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jun 22, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆226Feb 4, 2026Updated 4 months ago
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆351Jun 16, 2026Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆52May 28, 2026Updated last month
- ☆44May 11, 2026Updated last month
- ☆31Jun 24, 2025Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆36Sep 21, 2021Updated 4 years ago