labsyspharm / ashlarLinks
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
☆156Updated 3 months ago
Alternatives and similar repositories for ashlar
Users that are interested in ashlar are comparing it to the libraries listed below
Sorting:
- ☆90Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated last month
- Bio-Formats image file format to raw format converter☆102Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated last month
- Raw format to OME-TIFF converter☆56Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆108Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 10 months ago
- StarDist plugin for napari☆39Updated last year
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- ☆51Updated 6 months ago
- ☆36Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆71Updated 2 weeks ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆55Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 7 months ago
- Read and write life sciences file formats☆142Updated 5 months ago
- MIST-inspired microscope image stitching package☆78Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆171Updated 6 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 10 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆186Updated this week
- multimodal whole slide image registration in a graph structure☆95Updated last year
- native Python dataclasses for the OME data model☆64Updated 2 weeks ago